Job Description P0A6S7 Confidence 99.95% Date Thu Jan 5 11:03:50 GMT 2012 Rank 42 Aligned Residues 266 % Identity 15% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	Q	R	N	A	S	M	T	V	I	G	A	G	S	Y	G	T	A	L	A	I	T	L	A	R	N	G	H	E	V	V	L	W	G	H	D	P	E	H	I	A	T	L	E	R	D	R	C	N	A	A	F	L	P	D	V	P	F	P	D	T	L	H	L	E	S	D	L	A	T	A	L	A	A	S	R	N	I	L
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	P	T	D	K	K	I	G	F	L	G	L	G	L	M	G	S	G	I	V	S	N	L	L	K	M	G	H	T	V	T	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	L	G	R	T	P	A	E	V	V	S	T	C	D	I	T	F
Template Known Secondary structure						S	S								S													T	T								S	S	G	G	G	G						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S										S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310															.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		81	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		V	V	V	P	S	H	.	.	.	.	V	F	G	E	V	L	R	Q	I	K	P	L	M	R	P	D	A	R	L	V	W	A	T	K	G	L	E	A	E	T	G	R	L	L	Q	D	V	A	R	E	A	L	G	D	Q	I	P	L	A	V	I	S	G	P	T	F	A	K	E	L	A	A	G	L	P	T	A	I	S	L
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																									.																				.	.	.	.	.
Template Conservation																																				.																				.	.	.	.	.
Template Sequence		A	C	V	S	D	P	K	A	A	K	D	L	V	L	G	P	S	G	V	L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	.	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	.	.	.	.	.	F	L	E	A	P	V	S	G	N	Q	Q	L	S	N	D	G	M	L	V	I	L
Template Known Secondary structure					S	S										S	T	T		G	G	G	G			T	T							S		.																T	T			.	.	.	.	.								S								T
Template Predicted Secondary structure																																				.																				.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	T	D	Q	T	F	A	D	D	L	Q	Q	L	L	H	C	G	K	S	F	R	V	Y	S	N	P	D	F	I	G	V	Q	L	G	G	A	V	K	N	V	I	A	I	G	A	G	M	S	D	G	I	G	F	G	A	N	A	R	T	A	L	I	T	R	G	L	A	E	M	S	R	L	G	A	A	L	G	A	D
Query Conservation
Alig confidence																				.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	G	D	R	G	L	Y	E	D	C	S	S	C	F	Q	A	M	.	G	K	T	S	F	F	L	G	E	V	G	N	A	A	K	M	M	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	V	Q	G	S	F	M	A	T	I	A	E	G	L	T	L	A	Q	V	T	G	Q	S
Template Known Secondary structure												T								.								S	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	T
Template Predicted Secondary structure																				.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440																		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	T	F	M	G	M	A	G	L	G	D	L	V	L	T	C	T	D	N	Q	S	R	N	R	R	F	G	M	M	L	G	Q	G	M	D	V	Q	S	A	Q	E	K	I	G	Q	V	V	E	G	Y	R	N	T	K	E	V	R	E	L	A	H	R	F	G	V	E	M	P	I	T	E	E	I	Y	Q	V	L	Y
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	T	L	L	D	I	L	N	Q	G	Q	L	A	S	I	F	L	D	Q	K	C	Q	N	I	L	Q	G	N	F	K	P	D	F	Y	L	K	Y	.	.	.	.	.	.	.	.	.	.	.	I	Q	K	D	L	R	L	A	I	A	L	G	D	A	V	N	H	P	T	P	M	A	A	A	A	N	E	V	Y	K
Template Known Secondary structure												S	T	T															T					S	S	B				.	.	.	.	.	.	.	.	.	.	.															T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.												.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions