Job Description P26218 Confidence 79.91% Date Thu Jan 5 11:42:49 GMT 2012 Rank 13 Aligned Residues 318 % Identity 13% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	K	D	E	I	G	F	S	Y	N	G	Y	Y	R	S	G	W	G	T	A	S	H	G	S	P	K	S	W	A	I	G	S	L	G	R	F	G	N	E	Y	S	G	W	F	D	L	Q	L	K	Q	R	V	Y	N	E	N	G	K	R	V	D	A	V	V	M	M	D	G	N	V	G	Q	Q	Y	S	T	G	W	F
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Sequence		Y	N	K	D	G	N	K	L	D	L	Y	G	K	A	V	G	R	H	V	W	T	T	T	G	D	S	.	.	.	.	.	.	.	.	.	.	.	K	N	A	D	Q	T	Y	A	Q	I	G	F	K	G	E	T	Q	I	N	T	D	L	T	G	F	G	Q	W	E	Y	R	T	.	.	.	.	.	.	.	.	K	A	D
Template Known Secondary structure					T	T																		S	T	T		.	.	.	.	.	.	.	.	.	.	.																		S	S	S	S												.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.												30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.									.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		G	D	N	A	G	G	E	N	Y	M	Q	F	S	D	M	Y	V	T	T	K	G	F	L	P	F	A	P	E	A	D	F	W	V	G	K	H	G	A	P	K	I	E	.	I	Q	M	L	D	W	K	T	Q	R	T	D	A	A	A	G	V	G	L	E	N	W	K	V	G	P	G	K	I	D	I	A	L	V	R	E	D
Query Conservation																																												.
Alig confidence																				.	.	.	.																					.												.
Template Conservation																				.	.	.	.																																	.
Template Sequence		R	A	E	G	E	Q	Q	N	S	N	L	V	R	L	A	F	A	G	.	.	.	.	L	K	Y	A	E	V	G	S	I	D	Y	G	R	N	Y	G	I	V	Y	D	V	E	S	Y	T	D	X	A	P	Y	F	S	.	G	E	T	W	G	G	A	Y	T	D	N	Y	X	T	S	R	A	G	G	L	L	T	Y	R	N
Template Known Secondary structure		S		T	T			S	T	T										.	.	.	.				T	T	T											T	T						T	T			S	S	S	S	S	.	S		S	T	T	T	S	S	S	S	S	T	T	S	S
Template Predicted Secondary structure																				.	.	.	.																																	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.									.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.
Query Sequence		V	D	D	Y	D	R	S	L	Q	N	K	Q	Q	I	N	T	N	T	I	D	L	R	Y	K	D	I	P	L	W	D	K	A	T	L	M	V	S	G	R	Y	V	T	A	N	E	S	A	S	.	.	.	.	.	.	.	.	E	K	D	N	Q	D	N	N	G	Y	Y	D	W	K	D	T	W	M	F	G	T	S	L	T
Query Conservation																																																		.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	F	F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D
Template Known Secondary structure		S	S	S	S	S	S		S	S											B		S	S	S		G	G	G		B		S											T	T														S	T	T	S	S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	F	D	K	G	G	F	N	E	F	S	F	L	V	A	N	N	S	I	A	S	N	F	G	R	Y	A	G	A	S	P	F	T	T	F	N	G	R	Y	Y	G	D	H	T	G	G	T	A	V	R	L	T	S	Q	G	E	A	Y	I	G	D	H	F	I	V	A	N	A	I	V	Y	S	F	G	N	D	I	Y	S
Query Conservation
Alig confidence							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Sequence		A	N	N	V	Y	.	.	.	.	.	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	.	.	.	.	.	.	.	.	.	.	.	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	.	.
Template Known Secondary structure			T	T			.	.	.	.	.									S	S							.	.	.	.	.	.	.	.	.	.	.	T	T	T							S														T	T	S														S		.	.
Template Predicted Secondary structure							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template SS confidence
		220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240												.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	T	G	A	H	S	D	F	E	S	I	R	A	V	V	R	P	A	Y	I	W	D	Q	Y	N	Q	T	G	V	E	L	G	Y	F	T	Q	Q	N	K	D	A	N	S	N	K	F	N	E	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	N	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D
Template Known Secondary structure		.	T	T	T	T	S																		S	S																S	S		T	T	T	T		S	S
Template Predicted Secondary structure		.
Template SS confidence
			282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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