Job Description P26218 Confidence 51.72% Date Thu Jan 5 11:42:49 GMT 2012 Rank 41 Aligned Residues 117 % Identity 11% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	G	T	A	V	R	L	T	S	Q	G	E	A	Y	I	G	D	H	F	I	V	A	N	A	I	V	Y	S	F	G	N	D	I	Y	S	Y	E	T	G	A	H	S	D	F	E	S	I	R	A	V	V	R	P	A	Y	I	W	D	Q	Y	N	Q	T	G	V	E	L	G	Y	F	T	Q	Q	N	K	D	A	N	S
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		Q	H	E	N	K	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	.	.	.	.	.	.	.	Y	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	Y	S	N
Template Known Secondary structure																			T	T															.	.	.	.	.	.	.																		S	S	S	S																			S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	F	N	E	S	G	Y	K	T	T	L	F	H	T	F	K	V	N	T	S	M	L	T	S	R	P	E	I	R	F	Y	A	T	Y	I	K	A	L	E	N	E	L	D	G	F	T	F	E	D	N	K	D	D	Q	F	A	V	G	A	Q
Query Conservation
Alig confidence								.	.														.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.														.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	G	K	N	H	.	.	D	T	G	V	S	P	V	F	A	G	G	V	E	.	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	L	S	L	G	V	S
Template Known Secondary structure		S	S					.	.														.					T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.														.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.															.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions