Job Description P26218 Confidence 58.16% Date Thu Jan 5 11:42:49 GMT 2012 Rank 34 Aligned Residues 152 % Identity 16% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	W	D	K	A	T	L	M	V	S	G	R	Y	V	T	A	N	E	S	A	S	E	K	D	N	Q	D	N	N	G	Y	Y	D	W	K	D	T	W	M	F	G	T	S	L	T	Q	K	F	D	K	G	G	F	N	E	F	S	F	L	V	A	N	N	S	I	A	S	N	F	G	R	Y	A	G	A	S	P	F	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	.	.	.	.
Template Known Secondary structure			S	S	S	S													T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	S	S													S	S					T	T	S		.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	N	G	R	Y	Y	G	D	H	T	G	G	T	A	V	R	L	T	S	Q	G	E	A	Y	I	G	D	H	F	I	V	A	N	A	I	V	Y	S	F	G	N	D	I	Y	S	Y	E	T	G	A	H	S	D	F	E	S	I	R	A	V	V	R	P	A	Y	I	W	D	Q	Y	N	Q	T	G	V	E	L	G	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																			.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.																																			.	.													.
Template Sequence		.	.	.	.	.	.	.	.	.	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	.	.	D	Y	R	Y	A	N	H	K	K	W	A	T	.	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.																		S	S	S													S	S	.	.	S				T	T	S	S	S				.										S	B	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																			.	.													.
Template SS confidence
											122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	Q	Q	N	K	D	A	N	S	N	K	F	N	E	S	G	Y	K	T	T	L	F	H	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K	L
Template Known Secondary structure				S					T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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