Job Description P26218 Confidence 28.31% Date Thu Jan 5 11:42:49 GMT 2012 Rank 78 Aligned Residues 55 % Identity 20% Template c1l6nA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein Resolution UNK

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	R	N	L	I	T	S	A	I	L	L	M	A	P	L	A	F	S	A	Q	S	L	A	E	S	L	T	V	E	Q	R	L	E	L	L	E	K	A	L	R	E	T	Q	S	E	L	K	K	Y	K	D	E	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	L	K	H	I	V	W	A	S	R	E	L	E	R	F	A	V	N	P	G	L	L	E	T	S	E	G	C	R	Q	I	L	G	Q	L	Q	P	S	L	Q	T	G	S	E	E	L	R	S	L	Y	N	T	I	A
Template Known Secondary structure																	T	T	S		G	G	G	T	T	S										T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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