Job Description P76578 Confidence 97.71% Date Wed Jan 25 15:21:09 GMT 2012 Rank 31 Aligned Residues 201 % Identity 14% Template c3q7aB_ PDB info PDB header:transferase/transferase inhibitor Chain: B: PDB Molecule:farnesyltransferase beta subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpp and l-778,123 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1177	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.		1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.		.	.	.	.	1250	.	.	.	.
Predicted Secondary structure																																			.																																					.
Query SS confidence																																			.																																					.
Query Sequence		I	K	E	L	K	A	Y	P	Y	G	C	L	E	Q	T	A	S	G	L	F	P	S	L	Y	T	N	A	A	Q	L	Q	A	L	.	G	I	K	G	D	S	D	E	K	R	R	A	S	V	D	I	G	I	S	R	L	L	Q	M	Q	R	D	N	G	G	F	A	L	W	D	K	.	N	G	D	E	E	Y	W	L	T
Query Conservation																																			.																																					.
Alig confidence																																			.															.	.	.	.	.	.	.																.
Template Conservation																																																		.	.	.	.	.	.	.
Template Sequence		A	S	S	F	F	Q	L	P	G	K	F	V	S	L	D	A	S	R	P	W	L	V	F	W	T	V	H	S	L	D	L	L	G	V	A	L	D	Q	G	T	K	D	R	V	V	S	T	L	.	.	.	.	.	.	.	L	H	F	L	S	P	K	G	G	F	G	G	G	P	A	N	S	Q	I	P	H	L	L	P	T
Template Known Secondary structure						S				G	G	G	G	G	G	G	G	G																T																.	.	.	.	.	.	.		T	T	B		T	T	S	S	B		S	S		T	T	T	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		1255	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.								.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		A	Y	V	M	D	F	L	V	R	A	G	E	Q	G	Y	S	V	P	.	.	.	.	.	.	.	T	D	A	I	N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	K	F	A	V	Q	S	Y	A	A	L	V	L	A	R	Q	Q	K	A	P	L	G	A	L
Query Conservation																				.	.	.	.	.	.	.
Alig confidence												.	.	.						.	.	.	.	.	.	.																											.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																																							.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	S	V	C	S	L	A	I	A	.	.	.	G	N	D	S	S	T	G	G	W	K	D	L	A	A	A	R	Q	S	I	Y	E	F	F	M	R	C	K	R	P	D	G	G	F	V	V	C	E	G	.	.	.	.	G	E	V	D	V	R	G	T	Y	C	L	L	V	V	A	T	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												.	.	.		B	S	S	T	T	S	B							T												B		T	T	S		B	B	S	S	T	T	.	.	.	.			B														.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.																																							.	.	.	.																	.	.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		1328	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.														.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	I	W	E	H	R	A	D	A	A	S	G	L	P	L	L	Q	L	G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	G	D	Y	G	S	S	L	R	D	N	A	L	M	L	S
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	I	I	T	P	E	L	L	H	N	V	D	K	F	V	S	A	C	Q	T	Y	E	G	G	F	A	C	A	S	F	P	F	P	E	P	S	C	R	V	S	M	A	E	A	H	G	G	Y	T	S	C	S	L	N	S	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T								T	T							T	T	B		T	T	S	S	B		S									S						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		1395	.	.	.	.	1400	.	.						.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.					1420	.	.
Predicted Secondary structure										.	.	.	.	.																		.	.	.	.
Query SS confidence										.	.	.	.	.																		.	.	.	.
Query Sequence		L	L	E	E	N	K	L	L	.	.	.	.	.	P	D	E	Q	Y	T	L	L	N	T	L	S	Q	Q	A	F	G	.	.	.	.	E	R	W
Query Conservation										.	.	.	.	.																		.	.	.	.
Alig confidence										.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		F	L	L	T	S	V	P	L	P	S	F	P	L	S	I	D	A	N	A	A	L	R	W	T	V	L	Q	Q	G	E	P	I	E	G	G	G	F
Template Known Secondary structure						T	S			T	T		S															T	B			G	G	G	T	T		B
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions