Job Description P76578 Confidence 39.40% Date Wed Jan 25 15:21:09 GMT 2012 Rank 127 Aligned Residues 197 % Identity 15% Template c3pybB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic; PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate Resolution 2.76 Å

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		1227	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.					.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		I	S	R	L	L	Q	M	Q	R	D	N	G	G	F	A	L	W	D	K	N	G	D	E	E	Y	W	L	T	A	Y	.	.	.	.	V	M	D	F	L	V	R	A	G	E	Q	G	Y	S	V	P	T	D	A	I	N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K
Query Conservation																																.	.	.	.
Alig confidence																	.	.	.	.	.	.										.	.	.	.											.	.																									.	.
Template Conservation																	.	.	.	.	.	.																								.	.																									.	.
Template Sequence		V	K	W	I	A	E	N	Q	L	S	D	G	S	W	G	.	.	.	.	.	.	D	A	Y	L	F	S	Y	H	D	R	L	I	N	T	L	A	C	V	V	A	L	R	S	.	.	W	N	L	F	P	H	Q	C	N	K	G	I	T	F	F	R	E	N	I	G	K	L	E	D	.	.	E	N	D	E	H	M	P	I
Template Known Secondary structure								T			T	T	S			S	.	.	.	.	.	.		S	S	S																			T	.	.	T	T																	G	G	G	G	G	T	.	.	S		S	S	S			T
Template Predicted Secondary structure																	.	.	.	.	.	.																								.	.																									.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.
		1303	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.						.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.
Predicted Secondary structure																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	K	F	A	V	Q	S	Y	A	A	L	V	L	A	R	.	.	.	.	.	Q	Q	K	A	P	L	G	A	L	R	E	I	W	E	H	R	A	D	A	A	S	G	L	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	E	V	A	F	P	S	L	L	E	I	A	R	G	I	N	I	D	V	P	Y	D	S	P	V	L	K	D	I	Y	A	K	K	E	L	K	L	T	R	I	P	K	E	I	M	H	K	I	P	T	T	L	L	H	S	L	E	G	M	R	D	L	D	W	E	K	L	L	K	L	Q	S	Q	D	G	S	F	L	F
Template Known Secondary structure		T					T								G	G	G				S		T	T		T	T															S						T	T	S			G	G	G	G			T	T			S							G	G	G			T	T	S	S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
				1344	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																																												.	.	.
Query SS confidence		.	.																																																																												.	.	.
Query Sequence		.	.	L	Q	L	G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	D	Y	G	S	S	L	R	D	N	A	L	M	L	S	L	L	E	E	N	K	L	L	P	D	E	Q	Y	T	L	L	N	T	L	S	Q	Q	A	F	.	.	.
Query Conservation		.	.																																																																												.	.	.
Alig confidence		.	.														.																						.	.	.	.																																					.	.	.
Template Conservation																	.																						.	.	.	.
Template Sequence		S	P	S	S	T	A	F	A	F	M	Q	T	R	D	S	.	N	C	L	E	Y	L	R	N	A	V	K	R	F	N	G	G	V	P	N	V	F	.	.	.	.	P	V	D	L	F	E	H	I	W	I	V	D	R	L	Q	R	L	G	I	S	R	Y	F	E	E	E	I	K	E	C	L	D	Y	V	H	R	Y	W	T
Template Known Secondary structure		B															.													T	T	T				S	S		.	.	.	.																	T	T		G	G	G	G														T
Template Predicted Secondary structure																	.																						.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.					.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
										1419	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	E	R	W	L	S	T	Q	E	S	N	A	L	F	L	A	A	R	T	I
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	G	I	C	W	A	R	C	S	H	V	Q	D	I	D	D	T	A	M	A	F	R	L	L	R	Q	H
Template Known Secondary structure		T	T				S	S	S	S		S			B														T
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions