 |
Job Description | P76578 | Confidence | 56.54% | Date | Wed Jan 25 15:21:09 GMT 2012 |
Rank | 107 | Aligned Residues | 93 |
% Identity | 16% | Template | c3pmmA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:putative cytoplasmic protein; |
PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578
|
Resolution | 1.90 Å |
|
 |
  |   |
1196 | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . | . | |
. | . | . | . | . | 1220 | . | . | . | . | . | . | . | . | . | 1230 | . | . | . | . | . | . | . | . | . | 1240 | . | . | . | . | . | . | . | . | . | 1250 | . | . | . | |
|
|
|
. | . | . | . | . | . | 1260 | . | . | . | . | . | . | . | . | . | 1270 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | P | S | L | Y | T | N | A | A | Q | L | Q | A | L | G | I | K | G | D | . |
S | D | E | K | R | R | A | S | V | D | I | G | I | S | R | L | L | Q | M | Q | R | D | N | G | G | F | A | L | W | D | K | N | G | D | E | E | Y | W | L | . |
. |
. |
. |
T | A | Y | V | M | D | F | L | V | R | A | G | E | Q | G | Y | S |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |
|   |
|
| . | . | . | . |
|
|   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|
|
| . | . |   |
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   | . |
Template Sequence |   |
W | L | T | X | V | I | P | D | F | L | E | L | V | D | L | P | E | G | N | A | V | R | R | Y | L | I | T | V | L | D | A | Q | I | A | A | L | A | E | C | Q | D | D | S | G | L | W | . |
. |
H | T | L | L | D | D | P | H | S | Y | L | E | A | S | A | T | A | G | F | A | Y | G | I | L | K | A | V | R | K | R | Y | . |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T | S |
|  | . | . |  | S | B | T | T |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
234 | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | |
|
280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | |
  |
  |   |
1271 | . | . | . | |
|
|
. | . | . | . | . | 1280 | . | . | . | . | . | . | . | . | . | 1290 | . |
Predicted Secondary structure |   |
|
|  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | P | T | D | . |
. |
. |
A | I | N | R | G | N | E | R | L | L | R | Y | L | Q | D | P | G |
Query Conservation |   |
|   |   |   | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |
|
|   |   |   |
|   |   |
|
|
Template Sequence |   |
V | G | Q | H | Y | A | G | V | A | E | K | A | I | R | G | I | V | Q | N | I | S | P | Q | G |
Template Known Secondary structure |   |
S |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  | T | B |
| T | T | S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
311 | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|