Job Description P76578 Confidence 99.56% Date Wed Jan 25 15:21:09 GMT 2012 Rank 17 Aligned Residues 173 % Identity 10% Template c3hrzC_ PDB info PDB header:immune system Chain: C: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b Resolution 2.20 Å

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		1446	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470												.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	Q	T	S	F	S	A	E	Q	L	T	G	E	K	A	Q	N	S	N	L	N	S	D	Q	.	.	.	.	.	.	.	.	.	.	.	L	V	T	L	Q	V	S	N	S	G	D	Q	P	L	W	L	R	M	D	A	S	G	Y	P	Q	S	A	P	L	P	A	N	N	V	L	Q	I	E	R	H	I	L	G	T
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		D	L	N	L	D	I	T	I	E	L	P	D	R	E	V	P	I	R	Y	R	I	N	Y	E	N	A	L	L	A	R	T	V	E	T	K	L	N	Q	D	I	T	V	T	A	S	G	D	G	K	A	T	M	T	I	L	T	F	Y	N	.	.	.	.	A	Q	L	V	C	N	K	F	H	L	N	V	S	V	E	N	I
Template Known Secondary structure												T	T		S	S								G	G	G	T	T								S	S											S													.	.	.	.							S
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.					.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.
		1515	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.		.	.	1540	.	.	.	.	.	.	.	.	.	1550		.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.
Predicted Secondary structure																									.														.
Query SS confidence																									.														.
Query Sequence		D	G	K	S	K	S	L	D	S	L	R	S	G	D	L	V	L	V	W	L	Q	V	K	.	A	S	N	S	V	P	D	A	L	V	V	D	L	.	L	P	A	G	L	E	L	E	N	Q	N	L	A	N	G	S	A	S	L	E	Q	S	G	G	E	V	Q	N	L	L	N	Q	M	Q	Q	A	S	I	K	H	I	E
Query Conservation																									.														.
Alig confidence							.	.	.	.	.	.	.	.	.										.														.																												.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		H	L	N	K	G	.	.	.	.	.	.	.	.	.	A	L	M	L	K	I	C	T	R	Y	L	G	E	V	D	S	T	M	T	I	I	D	I	S	M	L	T	G	F	L	P	D	A	E	D	L	T	R	L	S	K	G	V	D	R	Y	I	S	R	Y	E	.	.	.	.	.	.	.	.	.	.	V	D	N	N	M
Template Known Secondary structure							.	.	.	.	.	.	.	.	.												S	S	S													T	T				B										S	T	T								.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1331	.	.	.	.										.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.											.	.	.	1390	.
		1593	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.		.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.		.	1630	.	.	.	.	.	.	.	.	.	1640	.
Predicted Secondary structure																		.																					.
Query SS confidence																		.																					.
Query Sequence		F	R	D	D	R	F	V	A	A	V	A	V	D	E	Y	Q	.	P	V	T	L	V	Y	L	A	R	A	V	T	P	G	T	Y	Q	V	P	Q	.	P	M	V	E	S	M	Y	V	P	Q	W	R	A
Query Conservation																		.																					.
Alig confidence																		.																					.
Template Conservation
Template Sequence		A	Q	K	V	A	V	I	I	Y	L	N	K	V	S	H	S	E	D	E	C	L	H	F	K	I	L	K	H	F	E	V	G	F	I	Q	P	G	S	V	K	V	Y	S	Y	Y	N	L	D	E	K	C
Template Known Secondary structure			S		S											S	S	S												S			S	S											T	T	B	T	T
Template Predicted Secondary structure
Template SS confidence
		1396	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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