Job Description P76578 Confidence 98.15% Date Wed Jan 25 15:21:09 GMT 2012 Rank 28 Aligned Residues 200 % Identity 13% Template c3e37B_ PDB info PDB header:transferase Chain: B: PDB Molecule:protein farnesyltransferase subunit beta; PDBTitle: protein farnesyltransferase complexed with bisubstrate2 ethylenediamine scaffold inhibitor 5 Resolution 1.80 Å

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		1177	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210		.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		I	K	E	L	K	A	Y	P	Y	G	C	L	E	Q	T	A	S	G	L	F	P	S	L	Y	T	N	A	A	Q	L	Q	A	L	G	.	I	K	G	D	S	D	E	K	R	R	A	S	V	D	I	G	I	S	R	L	L	Q	M	Q	R	D	N	G	G	F	A	L	W	D	K	N	G	D	E	E	Y	W	L	T	A
Query Conservation																																				.
Alig confidence																																				.														.	.	.	.	.	.	.												.
Template Conservation																																																		.	.	.	.	.	.	.												.
Template Sequence		K	R	G	L	R	Q	L	T	D	A	Y	E	C	L	D	A	S	R	P	W	L	C	Y	W	I	L	H	S	L	E	L	L	D	E	P	I	P	Q	I	V	A	T	D	V	C	Q	F	L	.	.	.	.	.	.	.	E	L	C	Q	S	P	E	G	G	F	G	.	G	G	P	G	Q	Y	P	H	L	A	P	T	Y
Template Known Secondary structure										G	G	G	G	G	G	T	T																T	T																.	.	.	.	.	.	.				B		T	T	S	S	B	B	.	S	S	T	T			B
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.												.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.
		1256	.	.	.	1260	.	.	.	.	.			.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		Y	V	M	D	F	L	V	R	A	G	.	.	E	Q	G	Y	S	V	P	T	D	A	I	N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	K	F	A	V	Q	S	Y	A	A	L	V	L	A	R	Q	Q	K	A	P	L	G	A	L	R	E	I	W	E	H
Query Conservation												.	.
Alig confidence												.	.									.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	V	N	A	L	C	I	I	G	T	E	E	A	Y	D	I	I	N	R	.	.	.	E	K	L	L	Q	Y	L	Y	S	L	K	Q	P	D	G	S	F	.	.	.	L	M	H	V	G	G	E	V	D	V	R	S	A	Y	C	A	A	S	V	A	S	L	T	N	I	I	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			S			.	.	.											B		T	T	S		B	.	.	.	B	S	S	T	T			B															T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		1334	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.		.	.	.	.	1410	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		R	A	D	A	A	S	G	L	P	L	L	Q	L	G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	D	Y	G	S	S	L	R	D	N	A	L	M	L	S	L	L	E	E	N	K	L	L	P	D	E	.	Q	Y	T	L	L	N	T
Query Conservation																																																																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	L	F	E	G	T	A	E	W	I	A	R	C	Q	N	W	E	G	G	I	G	G	V	P	G	M	E	A	H	G	G	Y	T	F	C	G	L	A	A	L	V	I	L	K	R	E	R	S	L	N	L	K	S	L	L	Q	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T	T									B		T	T	S	S	B		S	S	T	T	S																		T		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		1413	.	.	.	.	.	.			1420	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		L	S	Q	Q	A	F	G	.	.	E	R	W
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		V	T	S	R	Q	M	R	F	E	G	G	F
Template Known Secondary structure					T	B		T	T	T		S	B
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions