Job Description P76578 Confidence 96.05% Date Wed Jan 25 15:21:09 GMT 2012 Rank 41 Aligned Residues 229 % Identity 13% Template c2v3nA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:transcobalamin-2; PDBTitle: crystallographic analysis of upper axial ligand2 substitutions in cobalamin bound to transcobalamin Resolution 2.73 Å

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		1197	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	L	Y	T	N	A	A	Q	L	Q	A	L	G	I	K	G	D	S	D	E	K	R	R	A	S	V	D	I	G	I	S	R	L	L	Q	M	Q	R	D	N	G	G	F	A	L	W	D	K	N	G	D	E	E	Y	W	L	T	A	Y	V	M	D	F	L	V	R	A	G	E	Q	G	Y	S	V	P	T	D	A	I
Query Conservation
Alig confidence																																															.																									.	.	.	.
Template Conservation																																															.																									.	.	.	.
Template Sequence		L	N	P	S	I	Y	V	G	L	R	L	S	S	L	Q	A	G	A	K	E	A	H	Y	L	H	S	L	K	L	S	Y	Q	Q	S	L	L	R	P	A	S	N	K	D	D	N	.	D	S	E	A	K	P	S	M	G	Q	L	A	L	Y	L	L	A	L	R	A	N	C	E	F	.	.	.	.	I	G	G	R	K	G
Template Known Secondary structure												T	S	S				T	T																		S			S	S		T	T		S	.		S	S																		T	T			.	.	.	.
Template Predicted Secondary structure																																															.																									.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.
		1277	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320		.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.
Predicted Secondary structure																																														.																																.	.	.	.
Query SS confidence																																														.																																.	.	.	.
Query Sequence		N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	K	F	A	V	Q	S	Y	A	A	L	V	L	A	R	Q	Q	.	K	A	P	L	G	A	L	R	E	I	W	E	H	R	A	D	A	A	S	G	L	P	L	L	Q	L	G	V	A	L	K	.	.	.	.
Query Conservation																																														.																																.	.	.	.
Alig confidence																																														.												.	.																			.	.	.	.
Template Conservation																																																										.	.
Template Sequence		D	R	L	V	S	Q	L	K	R	F	L	E	D	E	K	R	A	I	G	H	N	H	Q	G	H	P	R	T	S	Y	Y	Q	Y	S	L	G	I	L	A	L	C	V	H	Q	K	R	V	H	D	S	V	V	G	K	L	L	.	.	Y	A	V	E	H	S	V	D	T	M	A	M	A	G	M	A	F	S	C	L	E	L
Template Known Secondary structure																					T	T	S		S			S	S														T	T	T													.	.
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
					1352	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.					.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.
Predicted Secondary structure		.	.	.																																																							.	.	.	.
Query SS confidence		.	.	.																																																							.	.	.	.
Query Sequence		.	.	.	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	D	Y	G	S	S	L	R	D	N	A	L	M	L	S	L	L	E	E	N	K	L	L	P	D	E	.	.	.	.	Q	Y	T	L	L	N	T	L	S	Q	Q	A	F	G	E	R	W	L	S
Query Conservation		.	.	.																																																							.	.	.	.
Alig confidence		.	.	.																										.	.							.																					.	.	.	.
Template Conservation																														.	.							.
Template Sequence		S	N	L	N	P	K	Q	R	N	R	I	N	L	A	L	K	R	V	Q	E	K	I	L	K	A	Q	T	P	.	.	E	G	Y	F	G	N	.	V	Y	S	T	P	L	A	L	Q	L	L	M	G	S	L	R	P	S	V	E	L	G	T	A	C	L	K	A	K	A	A	L	Q	A	S	L	Q	H	K	T	F	Q	N
Template Known Secondary structure			T	S		G	G	G																		T	B		T	.	.	T	S		B	S	S	.	T	T	T									T	T		S	S																					T	T	T
Template Predicted Secondary structure																														.	.							.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		1425	.	.	.	.	1430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	E	S	N	A	L	F	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	M	I	S	Q	L	L	P	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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