Job Description P76578 Confidence 100.00% Date Wed Jan 25 15:21:09 GMT 2012 Rank 12 Aligned Residues 549 % Identity 14% Template c2qkiA_ PDB info PDB header:immune system/hydrolase inhibitor Chain: A: PDB Molecule:complement c3; PDBTitle: human c3c in complex with the inhibitor compstatin Resolution 2.40 Å

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		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	R	Y	H	N	R	L	D	I	F	T	Q	S	L	E	N	G	A	A	Q	Q	G	I	E	V	S	L	L	N	E	K	G	Q	T	L	T	Q	A	T	S	D	A	Q	G	H	V	Q	L	E	N	D	K	N	A	A	L	L	L	A	R	K	D	G	Q	T	T	L	L	D	L	K	L	P	A	L	D	L	A	E
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		I	L	R	L	E	S	E	E	T	M	V	L	E	A	H	D	A	Q	G	D	V	P	.	V	T	V	T	V	H	D	F	P	G	K	K	L	V	L	S	S	E	K	T	V	L	T	P	A	T	N	H	M	G	N	V	T	F	T	I	P	A	N	R	G	R	N	K	F	V	T	V	Q	A	T	F	G	T	Q	V	V
Template Known Secondary structure					B	T	S										S			S				.								S	S	S				B	S									T	T	T	T	S								B																	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440			.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		F	N	I	A	G	A	P	G	Y	S	K	Q	F	F	M	F	G	P	R	D	L	Y	R	P	G	E	T	V	I	L	N	G	L	L	R	D	A	D	G	K	A	L	P	N	Q	P	I	K	L	D	V	I	K	P	D	G	Q	V	L	R	S	V	V	S	Q	.	.	P	E	N	G	L	Y	H	F	T	W	P	L	D
Query Conservation																																																																			.	.
Alig confidence																																											.																								.	.
Template Conservation																																											.
Template Sequence		E	K	V	V	L	V	S	L	Q	S	G	Y	L	F	I	Q	T	D	K	T	I	Y	T	P	G	S	T	V	L	Y	R	I	F	T	V	N	H	K	L	L	P	.	V	G	R	T	V	M	V	N	I	E	N	P	E	G	I	P	V	K	Q	D	S	L	S	S	Q	N	Q	L	G	V	L	P	L	S	W	D	I	P
Template Known Secondary structure																			S		S				T	T												T	T	S		B	.												T	T												T	T	T	T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.			.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.			.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																									.	.
Query SS confidence																				.	.																									.	.
Query Sequence		S	N	A	A	T	G	M	W	H	I	R	A	N	T	G	D	N	Q	.	.	Y	R	M	W	D	F	H	V	E	D	F	M	P	E	R	M	A	L	N	L	T	G	E	K	.	.	T	P	L	T	P	K	D	E	V	K	F	S	V	V	G	Y	Y	L	Y	G	A	P	A	N	G	N	T	L	Q	G	Q	L	F	L
Query Conservation																				.	.																									.	.
Alig confidence																				.	.																									.	.																													.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		E	L	V	N	M	G	Q	W	K	I	R	A	Y	Y	E	N	S	P	Q	Q	V	F	S	T	E	F	E	V	K	E	Y	V	L	P	S	F	E	V	I	V	E	P	T	E	K	F	Y	Y	I	Y	N	E	K	G	L	E	V	T	I	T	A	R	F	L	Y	G	K	K	V	E	G	T	A	F	.	.	.	.	.	.
Template Known Secondary structure		S	S													T	T		T	T	S															S								S	S	S	S			T	T		T	T											T	T	S		B							.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.								.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.			.	.	.	.	600
Predicted Secondary structure																																															.	.	.	.	.	.	.																						.	.
Query SS confidence																																															.	.	.	.	.	.	.																						.	.
Query Sequence		R	P	L	R	E	A	V	S	A	L	P	G	F	E	F	G	D	I	A	A	E	N	L	S	R	T	L	D	E	V	Q	L	T	L	D	D	K	G	R	G	E	V	S	T	E	.	.	.	.	.	.	.	S	Q	W	K	E	T	H	S	P	L	Q	V	I	F	Q	G	S	L	L	E	S	.	.	G	G	R	P	V
Query Conservation																																															.	.	.	.	.	.	.																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.																						.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	I	F	G	I	Q	D	G	E	Q	R	I	S	L	P	E	S	L	K	R	I	P	I	E	D	G	S	G	E	V	V	L	S	R	K	V	L	L	D	G	V	Q	R	A	E	D	L	V	G	K	S	L	Y	V	S	A	T	V	I	L	H	S	G	S	D	M	V	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.							S	S	S						G	G	G							B	T	T														T	T				G	G	G	T	T												T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	R	A	E	Q	A	I	W	P	A	D	A	L	P	G	I	R	P	Q	F	A	S	K	S	V	Y	D	Y	R	T	D	S	T	V	K	Q	P	I	V	D	E	G	S	N	A	A	F	D	I	V	Y	S	D	A	Q	G	V	K	K	A	V	S	G	L	Q	V	R	L	I	R	E	R	R	D	Y	Y	W	N	W
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	R	S	G	I	P	I	V	T	S	P	Y	Q	I	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	T	P	K	Y	F	K	P	G	M	P	F	D	L	M	V	F	V	T	N	P	D	G	S	P	A	Y	R	V	P	V	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S		S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		S				T	T	S											T	T	S		B			S						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.																	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	D	E	G	W	Q	S	Q	F	D	Q	K	D	L	I	E	N	E	Q	T	L	D	L	K	A	D	E	T	G	K	V	S	F	P	V	E	W	G	A	Y	R	L	E	V	K	A	P	N	E	A	V	S	S	V	R	F	W	A	G	Y	S	W	Q	D	N	S	D	G	S	G	A	V	R	P	D	R	V	T	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Q	G	E	D	T	V	Q	S	L	T	Q	G	D	G	V	A	K	L	S	I	N	T	H	P	S	Q	K	P	L	S	I	T	V	R	T	K	K	Q	E	L	S	E	A	E	.	Q	A	T	R	T	M	Q	A	L	P	Y	S	T	V	G	N	S	N	N	Y	L	H	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	G	G	G						T	T	S										S			S											T	T	S		T	T	T	.	S													T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
														370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.								.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.			.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.
Predicted Secondary structure																											.	.	.	.	.	.	.																				.	.
Query SS confidence																											.	.	.	.	.	.	.																				.	.
Query Sequence		K	L	D	K	A	S	Y	R	P	G	D	T	I	K	L	H	I	A	A	P	T	A	G	K	G	.	.	.	.	.	.	.	Y	A	M	V	E	S	S	E	G	P	L	W	W	Q	E	I	D	V	R	.	.	A	Q	G	L	D	L	T	I	P	V	D	K	T	W	N	R	H	D	L	Y	L	S	T	L	V	V	R
Query Conservation																											.	.	.	.	.	.	.																				.	.
Alig confidence																											.	.	.	.	.	.	.																				.	.															.
Template Conservation																																																																					.
Template Sequence		S	V	L	R	T	E	L	R	P	G	E	T	L	N	V	N	F	L	L	R	M	D	R	A	H	E	A	K	I	R	Y	Y	T	Y	L	I	M	N	K	G	R	L	L	K	A	G	R	Q	V	R	E	P	G	Q	D	L	V	V	L	P	L	S	I	T	T	D	F	.	I	P	S	F	R	L	V	A	Y	Y	T	L
Template Known Secondary structure						S				T	T													T	T	T	G	G	G											T	T												T	T		S										G	G	G	.		S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.
		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.		.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		P	G	D	K	S	R	S	A	T	P	K	R	A	V	G	V	L	H	L	P	L	G	D	E	.	N	R	R	L	D	L	A	L	E	T	P	A	K	M	R	P	N	Q	P	L	T	V	K	I	K	A	S	T	K	N	G	E	K	P	K	Q	V	N	V	L	V	S	A	V	D	S	G	V	L	N	I	T	D	Y	V
Query Conservation																										.
Alig confidence									.	.	.															.										.																			.	.	.	.	.	.	.
Template Conservation									.	.	.																									.																			.	.	.	.	.	.	.
Template Sequence		I	G	A	S	G	Q	R	.	.	.	E	V	V	A	D	S	V	W	V	D	V	K	D	S	C	V	G	S	L	V	V	K	S	G	.	Q	S	Q	P	V	P	G	Q	Q	M	T	L	K	I	E	G	D	H	.	.	.	.	.	.	.	G	A	R	V	V	L	V	A	V	D	K	G	V	F	V	L	N	K	K	N
Template Known Secondary structure				S	S	S			.	.	.																S	S							S	.						T	T											T	.	.	.	.	.	.	.	T										T								T	T
Template Predicted Secondary structure									.	.	.																									.																			.	.	.	.	.	.	.
Template SS confidence
		516	.	.	.	520	.	.				.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.								.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
		911	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	D	P	W	Q	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	T	Q	S	K	I	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		588	.	590	.	.	.	.	.