Job Description P76578 Confidence 85.16% Date Wed Jan 25 15:21:09 GMT 2012 Rank 58 Aligned Residues 160 % Identity 16% Template c2pz4A_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:protein gbs052; PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae Resolution 1.80 Å

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		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																							330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	G	A	A	Q	Q	G	I	E	V	S	L	L	N	E	K	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	T	Q	A	T	S	D	A	Q	G	H	V	Q	L	E	N	D	K	N	A	A	L	L	L	A	R	K	D	G	Q	T	T	L	L	D	L	K	L
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	G	T	P	I	E	G	V	L	Y	Q	L	Y	Q	L	K	S	T	E	D	G	D	L	L	A	H	W	N	S	L	T	I	T	E	L	K	K	Q	A	Q	Q	V	F	E	A	T	T	N	Q	Q	G	K	A	T	F	N	Q	L	P	D	G	I	Y	Y	G	L	A	V	K	A	G	E	K	N	R	N	V	S	A
Template Known Secondary structure		S	S					S	S									S					T	T							T	S																			T	T	S									S										T	T				T	T	B
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.																		.	.	.	.	.	.	.	.	.
Query Sequence		P	A	L	D	L	A	E	F	N	I	A	G	A	P	G	Y	S	K	Q	F	F	M	F	G	P	R	D	L	Y	R	P	G	E	T	V	I	L	N	G	L	L	R	D	A	D	G	K	A	L	P	N	Q	P	.	I	K	L	D	V	I	K	P	D	G	Q	V	L	R	S	V	V	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.																		.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																		.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	V	D	L	S	E	D	K	V	I	Y	P	K	I	I	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	G	E	L	D	L	L	K	V	G	V	D	G	D	T	K	K	P	L	A	G	V	V	F	E	L	Y	E	K	N	G	R	T	P	I	R	V	K	N	G	V	H	S	Q	D	I	D
Template Known Secondary structure							S	S								B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T							S								T	T		S	S		B				T	T					S	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
							439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.					.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure		.	.	.	.	.																																			.	.	.	.
Query SS confidence		.	.	.	.	.																																			.	.	.	.
Query Sequence		.	.	.	.	.	S	Q	P	E	N	G	L	Y	H	F	T	W	P	L	D	S	N	A	A	T	G	M	W	H	I	R	A	N	T	G	D	N	Q	Y	.	.	.	.	R	M	W	D	F	H	V	E	D	F	M	P	E	R	M	A	L	N
Query Conservation		.	.	.	.	.																																			.	.	.	.
Alig confidence		.	.	.	.	.												.	.	.	.	.																			.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		A	A	K	H	L	E	T	D	S	S	G	H	I	R	I	S	.	.	.	.	.	G	L	I	H	G	D	Y	V	L	K	E	I	E	T	Q	S	G	Y	Q	I	G	Q	A	E	T	A	V	T	I	E	K	S	K	T	V	T	V	T	I	E
Template Known Secondary structure			B	S						T	T	S						.	.	.	.	.				S												T	T	B					S								T	T	S
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions