Job Description P76578 Confidence 97.43% Date Wed Jan 25 15:21:09 GMT 2012 Rank 32 Aligned Residues 150 % Identity 11% Template c2pmvB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:gastric intrinsic factor; PDBTitle: crystal structure of human intrinsic factor- cobalamin complex at 2.62 a resolution Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1269	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.					.	.	.	.	.	1340	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		Y	S	V	P	T	D	A	I	N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	K	F	A	V	Q	S	Y	A	A	L	V	L	A	R	Q	Q	K	A	P	L	G	A	L	R	E	I	W	E	H	R	.	.	.	.	A	D	A	A	S	G	L	P	L	L
Query Conservation																																																																				.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	S	A	Q	E	P	L	V	N	G	I	Q	V	L	M	E	N	S	V	T	S	S	A	Y	P	N	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	I	A	M	N	L	A	G	A	Y	N	L	K	A	Q	K	L	L	T	Y	Q	L	M	S	S	D	N	N	D	L	T	I	G	H	L	G
Template Known Secondary structure				T	T	T														T			S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.											S													T	T			T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.															.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		1345	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	D	Y	G	S	S	L	R	D	N	A	L	M	L	S	L	L	E	E	N	K	L	L	P	D	E	Q	Y	T	L	L	N	T	L	S	Q	Q	A	F	G	E	R	W	L	S
Query Conservation
Alig confidence															.	.																		.																								.
Template Conservation															.	.																		.																								.
Template Sequence		L	T	I	M	A	L	T	S	S	C	R	D	P	.	.	G	D	K	V	S	I	L	Q	R	Q	M	E	N	W	A	P	S	.	S	P	N	A	E	A	S	A	F	Y	G	P	S	L	A	I	L	A	L	C	Q	K	N	.	S	E	A	T	L	P	I	A	V	R	F	A	K	T	L	L	A	N	S	S	P	F	N
Template Known Secondary structure										T	T				.	.	T												T				S	.	S	T	T			G	G	G	G															.																				S
Template Predicted Secondary structure															.	.																		.																								.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		1425	.	.	.	.	1430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	E	S	N	A	L	F	L	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	T	G	A	M	A	T	L	A	L	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions