Job Description P76578 Confidence 100.00% Date Wed Jan 25 15:21:09 GMT 2012 Rank 4 Aligned Residues 665 % Identity 15% Template c2a73B_ PDB info PDB header:immune system Chain: B: PDB Molecule:complement c3; PDBTitle: human complement component c3 Resolution 3.30 Å

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		950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980					.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.		.	.	.	1010	.	.		.	.	.	.	.	.	.	1020	.	.	.
Predicted Secondary structure																																	.	.	.	.																											.							.
Query SS confidence																																	.	.	.	.																											.							.
Query Sequence		D	G	D	E	L	K	R	G	G	K	P	P	V	N	H	V	N	I	V	V	Q	Q	A	L	P	V	T	L	N	E	Q	.	.	.	.	G	E	G	S	V	T	L	P	I	G	D	F	N	G	E	L	R	V	M	A	Q	A	W	T	A	D	.	D	F	G	S	N	E	.	S	K	V	I	V	A	A	P	V	I	A
Query Conservation																																	.	.	.	.																											.							.
Alig confidence																																	.	.	.	.																											.							.
Template Conservation
Template Sequence		D	E	D	I	I	A	E	E	N	I	V	S	R	S	E	F	P	E	S	W	L	W	N	V	E	D	L	K	E	P	P	K	N	G	I	S	T	K	L	M	N	I	F	L	K	D	S	I	T	T	W	E	I	L	A	V	S	M	S	D	K	K	G	I	C	V	A	D	P	F	E	V	T	V	M	Q	D	F	F	I
Template Known Secondary structure									S																					S			B	T	T	B											S														T	T	T															S
Template Predicted Secondary structure
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.
		1024	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.		.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070					.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.																								.	.	.	.
Query SS confidence																										.																								.	.	.	.
Query Sequence		E	L	N	M	P	R	F	M	A	S	G	D	T	S	R	L	T	L	D	I	T	N	L	T	.	D	K	P	Q	K	L	N	V	A	L	T	A	S	G	L	L	E	L	V	S	D	S	P	.	.	.	.	A	A	V	E	L	A	P	G	V	R	T	T	L	F	I	P	V	R	A	L	P	G	Y	G	D	G	E	I
Query Conservation																										.																								.	.	.	.
Alig confidence																										.																								.	.	.	.																						.
Template Conservation																																																																											.
Template Sequence		D	L	R	L	P	Y	S	V	V	R	N	E	Q	V	E	I	R	A	V	L	Y	N	Y	R	Q	N	Q	E	L	K	V	R	V	E	L	L	H	N	P	A	F	C	S	L	A	T	T	K	R	R	H	Q	Q	T	V	T	I	P	P	K	S	S	L	S	V	P	Y	V	I	V	P	L	K	.	T	G	L	Q	E	V
Template Known Secondary structure							S				T	T														S	S													T	T				S			S	S	S										T	T													S	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.		.	.	.	.	.	.
		1099	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.									.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.		1160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.																						.
Query SS confidence																																										.	.	.	.	.	.	.	.																						.
Query Sequence		Q	A	T	I	S	G	L	A	L	P	G	E	T	V	A	D	Q	H	K	Q	W	K	I	G	V	R	P	A	F	P	A	Q	T	V	N	Y	G	T	A	L	.	.	.	.	.	.	.	.	Q	P	G	E	T	W	A	I	P	A	D	G	L	Q	N	F	S	P	V	T	L	.	E	G	Q	L	L	L	S	G	K	P
Query Conservation																																										.	.	.	.	.	.	.	.																						.
Alig confidence								.	.	.	.																															.	.	.	.	.	.	.	.																						.
Template Conservation								.	.	.	.
Template Sequence		E	V	K	A	A	V	.	.	.	.	Y	H	H	F	I	S	D	G	V	R	K	S	L	K	V	V	P	E	G	I	R	M	N	K	T	V	A	V	R	T	L	D	P	E	R	L	G	R	E	G	V	Q	K	E	D	I	P	P	A	D	L	S	D	Q	V	P	D	T	E	S	E	T	R	I	L	L	Q	G	T	P
Template Known Secondary structure								.	.	.	.	S	S	S															S	S														T	B	T	T	T	B	S	S												T	T	B		T	T											S	S	S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		889	890	.	.	.	.					.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
		1170	.	.	.	.	.	.							.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.				.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240
Predicted Secondary structure									.	.	.	.	.	.																																						.	.	.
Query SS confidence									.	.	.	.	.	.																																						.	.	.
Query Sequence		P	L	N	I	A	R	Y	.	.	.	.	.	.	I	K	E	L	K	A	Y	P	Y	G	C	L	E	Q	T	A	S	G	L	F	P	S	L	Y	T	N	A	A	Q	L	Q	A	L	G	I	K	G	.	.	.	D	S	D	E	K	R	R	A	S	V	D	I	G	I	S	R	L	L	Q	M	Q	R	D	N	G	G	F
Query Conservation									.	.	.	.	.	.																																						.	.	.
Alig confidence									.	.	.	.	.	.																																						.	.	.
Template Conservation
Template Sequence		V	A	Q	M	T	E	D	A	V	D	A	E	R	L	K	H	L	I	V	T	P	S	G	C	G	E	Q	N	M	I	G	M	T	P	T	V	I	A	V	H	Y	L	D	E	T	E	Q	W	E	K	F	G	L	E	K	R	Q	G	A	L	E	L	I	K	K	G	Y	T	Q	Q	L	A	F	R	Q	P	S	S	A	F
Template Known Secondary structure		S	S									T	T	T	G	G	G	G		S	S				S	T	T	G	G	G	G	G	T													T	T							T																		T	T	S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		965	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.
		1241	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.		.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.					.	.	.	.	.	1310	.	.	.	.	.
Predicted Secondary structure																																														.																					.	.	.	.
Query SS confidence																																														.																					.	.	.	.
Query Sequence		A	L	W	D	K	N	G	D	E	E	Y	W	L	T	A	Y	V	M	D	F	L	V	R	A	G	E	Q	G	Y	S	V	P	T	D	A	I	N	R	G	N	E	R	L	L	.	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	.	.	.	.	K	F	A	V	Q	S	Y	A	A	L	V
Query Conservation																																														.																					.	.	.	.
Alig confidence					.																								.																	.																					.	.	.	.
Template Conservation					.																								.
Template Sequence		A	A	F	.	V	K	R	A	P	S	T	W	L	T	A	Y	V	V	K	V	F	S	L	A	V	N	L	.	I	A	I	D	S	Q	V	L	C	G	A	V	K	W	L	I	L	E	K	Q	K	P	D	G	V	F	Q	E	D	A	P	V	I	H	Q	E	N	N	N	E	K	D	M	A	L	T	A	F	V	L	I	S
Template Known Secondary structure		B	S	S	.	S	S	S		B														T	T	T	T	T	.	S																			B		T	T	S		B				S			S	S					T	T
Template Predicted Secondary structure					.																								.
Template SS confidence
		1045	.	.		.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070		.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.
		1316	.	.	.	1320	.	.												.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	R	Q	Q	K	A	.	.	.	.	.	.	.	.	.	.	.	P	L	G	A	L	R	E	I	W	E	H	R	A	D	A	A	S	G	L	P	L	L	Q	L	G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	D	Y	G	S
Query Conservation									.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		L	Q	E	A	K	D	I	C	E	E	Q	V	N	S	L	P	G	S	I	T	K	A	G	D	F	L	E	A	N	Y	M	N	L	Q	R	S	Y	T	V	A	I	A	G	Y	A	L	A	Q	M	G	R	L	K	G	.	.	.	.	.	P	L	L	N	K	F	L	T	T	A	K	D	K	N	R	W	E	D	P	G	K
Template Known Secondary structure						T	T	T	S	T	T	T		T	T																G	G	G			S													T	T	T					.	.	.	.	.									T	S	B	T	T	T	B				S	S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		1129	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.						.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.
					1385	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.		.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.		.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																			.																											.
Query SS confidence		.	.	.																																			.																											.
Query Sequence		.	.	.	S	L	R	D	N	A	L	M	L	S	L	L	E	E	N	K	L	L	P	D	E	Q	Y	T	L	L	N	T	L	S	Q	Q	A	F	.	G	E	R	W	L	S	T	Q	E	S	N	A	L	F	L	A	A	R	T	I	Q	D	L	P	G	K	.	W	Q	A	Q	T	S	F	S	A	E	Q	L	T	G	E
Query Conservation		.	.	.																																			.																											.
Alig confidence		.	.	.																								.											.																											.
Template Conservation																												.
Template Sequence		Q	L	Y	N	V	E	A	T	S	Y	A	L	L	A	L	L	Q	L	K	D	F	D	F	V	P	P	.	V	V	R	W	L	N	E	Q	R	Y	Y	G	G	G	Y	G	S	T	Q	A	T	F	M	V	F	Q	A	L	A	Q	Y	Q	K	D	A	P	D	H	Q	E	L	N	L	D	V	S	L	Q	L	P	S	R	S
Template Known Secondary structure																			T	T		T	T	T				.							T				B	S	S	S			S																			S	S													T	T		S
Template Predicted Secondary structure																												.
Template SS confidence
		1204	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.		1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.
		1460	.	.	.	.	.	.	.	.	.	1470												.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	Q	N	S	N	L	N	S	D	Q	.	.	.	.	.	.	.	.	.	.	.	L	V	T	L	Q	V	S	N	S	G	D	Q	P	L	W	L	R	M	D	A	S	G	Y	P	Q	S	A	P	L	P	A	N	N	V	L	Q	I	E	R	H	I	L	G	T	D	G	K	S	K	S	L	D	S	L	R	S	G	D
Query Conservation													.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	I	T	H	R	I	H	W	E	S	A	S	L	L	R	S	E	E	T	K	E	N	E	G	F	T	V	T	A	E	G	K	G	Q	G	T	L	S	V	V	T	M	Y	H	A	K	A	K	D	Q	L	T	C	N	K	F	D	L	K	V	T	I	K	P	A	P	E	T	E	K	R	P	Q	D	A	K	N	T	M
Template Known Secondary structure		S								S	S	S	S									S	S										S	S																			S			S	S												T	T	S				S	S		S
Template Predicted Secondary structure
Template SS confidence
		1283	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.
		1529	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.						.	.	.	.	1600	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		L	V	L	V	W	L	Q	V	K	A	S	N	S	V	P	D	A	L	V	V	D	L	L	P	A	G	L	E	L	E	N	Q	N	L	A	N	G	S	A	S	L	E	Q	S	G	G	E	V	Q	N	L	L	N	Q	M	Q	Q	A	S	I	K	H	I	E	F	R	D	.	.	.	.	.	D	R	F	V	A	A	V	A
Query Conservation																																																																					.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	E	I	C	T	R	Y	R	G	D	Q	D	A	T	M	S	I	L	D	I	S	M	M	T	G	F	A	P	D	T	D	D	L	K	Q	L	A	N	G	V	D	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	K	Y	E	L	D	K	A	F	S	D	R	N	T	L	I	I	Y	L	D
Template Known Secondary structure											S	S	S		B		S									S	S														S	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								S	S	S	S								S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1363	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.																.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.
		1604	.	.	.		.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.		.	1630	.	.	.	.	.	.	.	.	.	1640	.	.
Predicted Secondary structure						.																						.
Query SS confidence						.																						.
Query Sequence		V	D	E	Y	.	Q	P	V	T	L	V	Y	L	A	R	A	V	T	P	G	T	Y	Q	V	P	Q	.	P	M	V	E	S	M	Y	V	P	Q	W	R	A	T
Query Conservation						.																						.
Alig confidence						.																						.
Template Conservation
Template Sequence		K	V	S	H	S	E	D	D	C	L	A	F	K	V	H	Q	Y	F	N	V	E	L	I	Q	P	G	A	V	K	V	Y	A	Y	Y	N	L	E	E	S	C	T
Template Known Secondary structure			B		S	S	S											S	S				S											T	T
Template Predicted Secondary structure
Template SS confidence
		1428	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.