Job Description P76578 Confidence 97.40% Date Wed Jan 25 15:21:09 GMT 2012 Rank 33 Aligned Residues 198 % Identity 12% Template c1tnuL_ PDB info PDB header:transferase Chain: L: PDB Molecule:geranylgeranyl transferase type i beta subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a gcincckvl peptide derived from rhob Resolution 2.70 Å

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		1178	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	L	K	A	Y	P	Y	G	C	L	E	Q	T	A	S	G	L	F	P	S	L	Y	T	N	A	A	Q	L	Q	A	L	G	I	K	G	D	S	D	E	K	R	R	A	S	V	D	I	G	I	S	R	L	L	Q	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		R	C	L	Q	V	L	P	E	R	Y	S	S	L	E	T	S	R	L	T	I	A	F	F	A	L	S	G	L	D	M	L	D	S	L	D	V	V	N	K	D	D	I	I	E	W	I	.	.	.	.	.	.	.	Y	S	L	Q	V	L	P	T	E	D	R	S	N	L	D	R	C	G	F	R	G	S	S	Y	L	G	I
Template Known Secondary structure					S				G	G	G	G	G	G	G	G	G															T	T		G	G	G	S										.	.	.	.	.	.	.		T	T						T	T		T	T	G	G	G					S	S	S	T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
					1235	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	R	D	N	G	G	F	A	L	W	D	K	N	G	D	E	E	Y	W	L	T	A	Y	V	M	D	F	L	V	R	A	G	E	Q	G	Y	S	V	P	T	D	A	I	N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	K	F	A	V	Q	S	Y
Query Conservation		.	.	.
Alig confidence		.	.	.										.																														.	.	.
Template Conservation														.																														.	.	.
Template Sequence		P	F	N	P	S	K	N	P	G	T	A	H	.	P	Y	D	S	G	H	I	A	M	T	Y	T	G	L	S	C	L	I	I	L	G	D	D	L	S	R	V	D	K	.	.	.	E	A	C	L	A	G	L	R	A	L	Q	L	E	D	G	S	F	C	A	V	P	E	G	S	E	N	D	M	R	F	V	Y	C	A	S
Template Known Secondary structure					S	S		S						.	T	T																		T	T			S	T	T	S			.	.	.											B		T	T	S		B		S	S	T	T					B
Template Predicted Secondary structure														.																														.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		1312	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	V	L	A	R	Q	Q	K	A	P	L	G	A	L	R	E	I	W	E	H	R	A	D	A	A	S	G	L	P	L	L	Q	L	G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	D	Y	G	S	S	L	R	D	N	A	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	I	C	Y	M	L	N	N	W	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	M	K	K	A	I	S	Y	I	R	R	S	M	S	Y	D	N	G	L	A	Q	G	A	G	L	E	S	H	G	G	S	T	F	C
Template Known Secondary structure							T	T		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												T	B		T	T	S		B	B	S	S	T	T	S		B
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190																																			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		1392	.	.	.	.	.	.	.	1400	.	.	.	.						.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		M	L	S	L	L	E	E	N	K	L	L	P	D	.	.	.	.	.	E	Q	Y	T	L	L	N	T	L	S	Q	Q	A	F	G	E
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.
Template Conservation
Template Sequence		G	I	A	S	L	C	L	M	G	K	L	E	E	V	F	S	E	K	E	L	N	R	I	K	R	W	C	I	M	R	Q	Q	N	G
Template Known Secondary structure										T						S														T	T	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions