Job Description P76578 Confidence 99.55% Date Wed Jan 25 15:21:09 GMT 2012 Rank 18 Aligned Residues 196 % Identity 20% Template c1o79A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:squalene--hopene cyclase; PDBTitle: structures of human oxidosqualene cyclase inhibitors bound2 to a homolgous enzyme Resolution 2.8 Å

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		1205	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.																			.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	Q	A	L	G	I	K	G	D	S	D	E	K	R	R	A	S	V	D	I	G	I	S	R	L	L	Q	M	Q	R	D	N	G	G	F	A	L	W	D	K	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	E	Y	W	L	T	A	Y	V	M	D	F	L	V	R	A	G	E
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																																																																.	.
Template Sequence		V	W	A	L	N	T	L	R	L	P	D	E	R	R	R	R	D	A	M	T	K	G	F	R	W	I	V	G	M	Q	S	S	N	G	G	W	G	A	Y	D	V	D	N	T	S	D	L	P	N	H	I	P	F	C	D	F	G	E	V	T	D	P	P	S	E	D	V	T	A	H	V	L	E	C	F	G	S	F	.	.
Template Known Secondary structure							T				S																		T	T			T	T	S		B		S	S	S	S	S	B			S	S	G	G	G	S	S	S			S	S			S	B			B															.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		1267	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	Y	S	V	P	T	D	A	I	N	R	G	N	E	R	L	L	R	Y	L	Q	D	P	G	M	M	S	I	P	Y	A	D	N	L	K	A	S	K	F	A	V	Q	S	Y	A	A	L	V	L	A	R	Q	Q	K	A	P	L	G	A	L	R	E	I	W	E	H	R	A	D	A	A	S	G	L	P	L	L	Q	L
Query Conservation
Alig confidence		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	G	Y	D	D	A	W	K	V	I	R	R	A	V	E	Y	L	K	R	E	Q	K	P	D	G	S	W	F	G	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	N	Y	L	Y	G	T	G	A	V
Template Known Secondary structure		.	T			T	T	S																T	T	S					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S
Template Predicted Secondary structure		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.																																							490	.	.	.	.	.	.	.	.	.	500
		1347	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380														.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.		.	.	.	.	.	.	.	.	1410	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		G	V	A	L	K	T	M	G	D	A	T	R	G	E	E	A	I	A	L	A	L	K	T	P	R	N	S	D	E	R	I	W	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	G	S	S	L	R	D	N	A	L	M	L	S	L	L	E	E	N	K	L	.	L	P	D	E	Q	Y	T	L	L	N	T
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		V	S	A	L	K	A	V	G	I	D	T	R	E	P	Y	I	Q	K	A	L	D	W	V	E	Q	H	Q	N	P	D	G	G	W	G	E	D	C	R	S	Y	E	D	P	A	Y	A	G	K	G	A	S	T	P	S	Q	T	A	W	A	L	M	A	L	I	A	G	G	R	A	E	S	E	A	A	R	R	G	V	Q	Y
Template Known Secondary structure								T	T			T	T	S												T	T	B		T	T	S	S	B	B			G	G	G	G	T		G	G	G	T	T		S		B															T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
		1413	.	.	.	.	.		.	1420	.	.	.																		.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.
Predicted Secondary structure								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	Q	Q	A	F	.	G	E	R	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	Q	E	S	N	A	L	F	L	A	A	R	T	I	Q	D	L
Query Conservation								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	E	T	Q	R	P	D	G	G	W	D	E	P	Y	Y	T	G	T	G	F	P	G	D	F	Y	L	G	Y	T	M	Y	R	H	V	F	P	T	L	A	L	G	R	Y	K	Q	A
Template Known Secondary structure								T	T	S						S							T	T	T						T	T																T
Template Predicted Secondary structure
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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