Job Description P76578 Confidence 97.77% Date Wed Jan 25 15:21:09 GMT 2012 Rank 30 Aligned Residues 379 % Identity 10% Template c1cwvA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:invasin; PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein Resolution 2.30 Å

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		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	F	F	M	F	G	P	R	D	L	Y	R	P	G	E	T	V	I	L	N	G	L	L	R	D	A	D	G	K	A	L	P	N	Q	P	I	K	L	D	V	I	K	P	D	G	Q	V	L	R	S	V	V	S	Q	P	E	N	G	L	Y	H	F	T	W	P	L	D	S	N	A	A	T	G	M	W	H	I	R	A
Query Conservation
Alig confidence																																																					.																			.	.	.
Template Conservation																																																					.																			.	.	.
Template Sequence		L	T	A	A	V	I	G	D	G	A	P	A	N	G	K	T	A	I	T	V	E	F	T	V	A	D	F	E	G	K	P	L	A	G	Q	E	V	V	I	T	T	N	N	G	A	L	P	N	K	I	T	.	E	K	T	D	A	N	G	V	A	R	I	A	L	T	N	T	T	D	.	.	.	G	V	T	V	V	T	A
Template Known Secondary structure								S		S			S	S	S	S	S											T	T	S		B			S									T	T		B	S					.					T	T	S							B		S	S		.	.	.
Template Predicted Secondary structure																																																					.																			.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.		.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.				.	.	.	.	.	.	580
		466	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		N	T	G	D	N	Q	Y	.	R	M	W	D	F	H	V	E	D	F	M	P	E	R	M	A	L	N	L	T	G	E	K	T	P	L	T	P	K	D	E	V	K	F	S	V	V	G	Y	Y	L	Y	G	A	P	A	N	G	N	T	L	Q	G	Q	L	F	L	R	P	L	R	E	A	V	S	A	L	P	G	F	E	F
Query Conservation									.
Alig confidence									.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	E	G	Q	R	Q	S	V	D	T	H	F	V	K	G	T	I	A	A	D	K	S	T	L	A	A	V	P	T	S	I	I	A	D	G	L	M	A	S	T	I	T	L	E	L	K	D	T	Y	G	D	P	Q	A	G	A	N	V	A	F	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T														B		G	G	G							S	S				T	T	S	S										B	B	T	T	S		B			S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	A	A	E	N	L	S	R	T	L	D	E	V	Q	L	T	L	D	D	K	G	R	G	E	V	S	T	E	S	Q	W	K	E	T	H	S	P	L	Q	V	I	F	Q	G	S	L	L	E	S	G	G	R	P	V	T	R	R	A	E	Q	A	I	W	P	A	D	A	L	P	G	I	R	P	Q	F	A	S	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	T	L	G	N	M	G	V	I	T	D	H	N	D	G	T	Y	S	A	P	L	T	.	.	.	.	.	S	T	T	L	G	V	A	T	V	T	V	K	V	D	G	A	A	F	S	V	P	S	V	T	V	N	F	T	A	D	P	I	P	D	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S	S	S									S	S	S								.	.	.	.	.		S	S											T	T																S	S			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.						.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.		.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		S	V	Y	D	Y	R	T	D	S	T	V	K	Q	P	I	V	D	E	G	S	N	A	A	F	D	I	V	Y	S	D	A	Q	G	V	K	K	A	V	S	G	.	L	Q	V	R	L	I	R	E	R	R	D	Y	Y	W	N	W	S	E	D	E	G	W	Q	S	Q	F	D	Q	K	D	L	I	E	N	E	Q	T	L	D
Query Conservation																																										.
Alig confidence		.																																								.
Template Conservation		.
Template Sequence		.	A	G	R	S	S	F	T	V	S	T	P	D	I	L	A	D	G	T	M	S	S	T	L	S	F	V	P	V	D	K	N	G	H	F	I	S	G	M	Q	G	L	S	F	T	Q	N	G	V	P	V	S	I	S	P	I	T	E	Q	P	D	S	Y	T	A	T	V	V	G	N	S	V	G	D	V	T	I	T	P	Q
Template Known Secondary structure		.	T	T	T						S		S				T	T	S											B		T	T	S		B			S			S								S											S	S									S	S
Template Predicted Secondary structure		.
Template SS confidence
			699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
		704	.	.	.	.					.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.				.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																		.	.	.
Query SS confidence							.	.	.	.																		.	.	.
Query Sequence		L	K	A	D	E	.	.	.	.	T	G	K	V	S	F	P	V	E	W	G	A	Y	R	L	E	V	.	.	.	K	A	P	N	E	A	V	S	S	V	R	F	W	A	G	Y	S	W	Q	D	N	S	D	G	S	G	A	V	R	P	D	R	V	T	L	K	L	D	K	A	S	Y	R	P	G	D	T	I	K	L	H
Query Conservation							.	.	.	.																		.	.	.
Alig confidence							.	.	.	.																		.	.	.
Template Conservation
Template Sequence		V	D	T	L	I	L	S	T	L	Q	K	K	I	S	L	F	P	V	P	T	L	T	G	I	L	V	N	G	Q	N	F	A	T	D	K	G	F	P	K	T	I	F	K	N	A	T	F	Q	L	Q	M	D	N	D	V	A	N	N	T	Q	Y	E	W	S	S	S	F	T	P	N	V	S	V	N	D	Q	G	Q	V	T
Template Known Secondary structure			T	T				G	G	G																		T	T					T	T	S				S				T	T								T	T		G	G	G	G	G	G						S	S	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		778	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
		777	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	P	T	A	G	K	G	Y	A	M	V	E	S	S	E	G	P	L	W	W	Q	E	I	D	V	R	A	Q	G	L	D	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	Y	Q	T	Y	S	E	V	A	V	T	A	K	S	K	K	F	P	S	Y	S	V	S	Y	R	F	Y	P	N	R	W	I	Y	D
Template Known Secondary structure				S			S	S									S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		858	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.