Job Description P0ABF6 Confidence 100.00% Date Thu Jan 5 11:15:23 GMT 2012 Rank 1 Aligned Residues 294 % Identity 100% Template c1alnA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	P	R	F	Q	T	A	F	A	Q	L	A	D	N	L	Q	S	A	L	E	P	I	L	A	D	K	Y	F	P	A	L	L	T	G	E	Q	V	S	S	L	K	S	A	T	G	L	D	E	D	A	L	A	F	A	L	L	P	L	A	A	A	C	A	R	T	P	L	S	N	F	N	V	G	A	I	A	R	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	H	P	R	F	Q	T	A	F	A	Q	L	A	D	N	L	Q	S	A	L	E	P	I	L	A	D	K	Y	F	P	A	L	L	T	G	E	Q	V	S	S	L	K	S	A	T	G	L	D	E	D	A	L	A	F	A	L	L	P	L	A	A	A	C	A	R	T	P	L	S	N	F	N	V	G	A	I	A	R	G	V
Template Known Secondary structure				G	G	G						T	S									T	T	G	G	G	S	T	T			S																															T	T		B		T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	T	W	Y	F	G	A	N	M	E	F	I	G	A	T	M	Q	Q	T	V	H	A	E	Q	S	A	I	S	H	A	W	L	S	G	E	K	A	L	A	A	I	T	V	N	Y	T	P	C	G	H	C	R	Q	F	M	N	E	L	N	S	G	L	D	L	R	I	H	L	P	G	R	E	A	H	A	L	R	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	T	W	Y	F	G	A	N	M	E	F	I	G	A	T	M	Q	Q	T	V	H	A	E	Q	S	A	I	S	H	A	W	L	S	G	E	K	A	L	A	A	I	T	V	N	Y	T	P	C	G	H	C	R	Q	F	M	N	E	L	N	S	G	L	D	L	R	I	H	L	P	G	R	E	A	H	A	L	R	D	Y
Template Known Secondary structure		T	S								B			T	T	S		G	G	G		B													T	T										S	S											T	T	B	T	T	G	G	G						T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	D	A	F	G	P	K	D	L	E	I	K	T	L	L	M	D	E	Q	D	H	G	Y	A	L	T	G	D	A	L	S	Q	A	A	I	A	A	A	N	R	S	H	M	P	Y	S	K	S	P	S	G	V	A	L	E	C	K	D	G	R	I	F	S	G	S	Y	A	E	N	A	A	F	N	P	T	L	P	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	D	A	F	G	P	K	D	L	E	I	K	T	L	L	M	D	E	Q	D	H	G	Y	A	L	T	G	D	A	L	S	Q	A	A	I	A	A	A	N	R	S	H	M	P	Y	S	K	S	P	S	G	V	A	L	E	C	K	D	G	R	I	F	S	G	S	Y	A	E	N	A	A	F	N	P	T	L	P	P	L
Template Known Secondary structure		S	T	T				G	G	G	G	T					B	T	S										S	S												T		B		T	T	T											T	T	S								B			T	T	S	T	T		B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	A	L	I	L	L	N	L	K	G	Y	D	Y	P	D	I	Q	R	A	V	L	A	E	K	A	D	A	P	L	I	Q	W	D	A	T	S	A	T	L	K	A	L	G	C	H	S	I	D	R	V	L	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	A	L	I	L	L	N	L	K	G	Y	D	Y	P	D	I	Q	R	A	V	L	A	E	K	A	D	A	P	L	I	Q	W	D	A	T	S	A	T	L	K	A	L	G	C	H	S	I	D	R	V	L	L	A
Template Known Secondary structure											T	T			G	G	G										T	T		S	S														T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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