Job Description P0AFA7 Confidence 3.49% Date Thu Jan 5 11:25:45 GMT 2012 Rank 31 Aligned Residues 264 % Identity 13% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	F	R	G	F	L	R	S	L	M	M	H	A	G	V	G	T	A	L	G	G	V	M	T	M	V	G	E	P	Q	N	L	I	I	A	K	A	A	G	W	H	F	G	D	F	F	L	R	M	S	P	V	T	V	P	V	L	I	C	G	L	L	T	C	L	L	V	E	K	L	R	W	F	G	Y	G	E	T
Query Conservation
Alig confidence																																																.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	.	.	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T			S	S	S	S																															T	T	T	S				.	.																T	T	G	G	G	T	T	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	E	K	V	R	E	V	L	Q	Q	F	D	D	Q	S	R	H	Q	R	T	R	Q	D	K	I	R	L	I	V	Q	A	I	I	G	V	W	L	V	T	A	L	A	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.			S																								S																									T			T	T	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
						317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.													.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	L	A	E	V	G	L	I	G	L	S	V	I	I	L	A	T	S	L	T	G	V	T	D	E	H	A	I	G	K	A	F	T	E	S	L	P	F	T	A	L	L	T	V	F	F	S	V	V	A	V	.	.	.	.	.	.	.	.	.	.	.	.	I	I	D	Q	Q	L	F	S	P	I	I	Q	F	V
Query Conservation		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L
Template Known Secondary structure		T	T										T	T												T	T	T																																				T						T	T		S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A	S	E	H	A	Q	L	S	L	F	Y	I	F	N	G	L	L	S	S	I	S	D	N	V	F	V	G	T	I	Y	I	N	E	A	K	A	A	M	E	S	G	A	I	T	L	K	Q	Y	E	L	L	A	V	A	I	N	T	G	T	N	L	P	S	V	A	T	P	N	G	Q	A	A	F	L	F	L	L	T
Query Conservation
Alig confidence																										.	.	.	.																																		.
Template Conservation																										.	.	.	.																																		.
Template Sequence		H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	.	.	.	.	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	.	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q
Template Known Secondary structure			T	S	T	T																				.	.	.	.												T	T	T	T		S	S																.										G	G	G
Template Predicted Secondary structure																										.	.	.	.																																		.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.					.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	A	P	L	I	R	L	S	Y	G	R	M	V	W	M	A	L	P	Y	T	L	V	L	T	L	V	G	L	L	C	V	E	F
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	.	.	.	.	.	.	.	.	.	.	.	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		520	.												.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions