Job Description P0A7I0 Confidence 100.00% Date Thu Jan 5 11:05:42 GMT 2012 Rank 1 Aligned Residues 354 % Identity 48% Template c3d5cX_ PDB info PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. Resolution 3.21 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	K	L	E	A	L	H	E	R	H	E	E	V	Q	A	L	L	G	D	A	Q	T	I	A	D	Q	E	R	F	R	A	L	S	R	E	Y	A	Q	L	S	D	V	S	R	C	F	T	D	W	Q	Q	V	Q	E	D	I	E	T	A	Q	M	M	L	D	D	P	E	M	R	E	M	A	Q	D	E	L	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	D	K	L	D	R	L	E	E	E	Y	R	E	L	E	A	L	L	S	D	P	E	V	L	K	D	K	G	R	Y	Q	S	L	S	R	R	Y	A	E	M	G	E	V	I	G	L	I	R	E	Y	R	K	V	L	E	D	L	E	Q	A	E	S	L	L	D	D	P	E	L	K	E	M	A	K	A	E	R	E	A
Template Known Secondary structure										T										T	T	S	T	T	T	T	S																																					T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	K	S	E	Q	L	E	Q	Q	L	Q	V	L	L	L	P	K	D	P	D	D	E	R	N	A	F	L	E	V	R	A	G	T	G	G	D	E	A	A	L	F	A	G	D	L	F	R	M	Y	S	R	Y	A	E	A	R	R	W	R	V	E	I	M	S	A	S	E	G	E	H	G	G	Y	K	E	I	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	A	R	K	E	A	L	E	K	E	L	E	R	H	L	L	P	K	D	P	M	D	E	R	D	A	I	V	E	I	R	A	G	T	G	G	E	E	A	A	L	F	A	R	D	L	F	N	M	Y	L	R	F	A	E	E	M	G	F	E	T	E	V	L	D	S	H	P	T	D	L	G	G	F	S	K	V	V	F
Template Known Secondary structure																		S	T	T																S	S																							T												T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	S	G	D	G	V	Y	G	R	L	K	F	E	S	G	G	H	R	V	Q	R	V	P	A	T	E	S	Q	G	R	I	H	T	S	A	C	T	V	A	V	M	P	E	L	P	D	A	E	L	P	D	I	N	P	A	D	L	R	I	D	T	F	R	S	S	G	A	G	G	Q	H	V	N	T	T	D	S	A	I
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		E	V	R	G	P	G	A	Y	G	T	F	K	Y	E	S	G	V	H	R	V	Q	R	V	P	V	T	E	T	Q	G	R	I	H	T	S	T	A	T	V	A	V	L	P	K	A	.	E	E	E	D	F	A	L	N	M	D	E	I	R	I	D	V	M	R	A	S	G	P	G	G	Q	G	V	N	T	T	D	S	A	V
Template Known Secondary structure					S	T	T						G	G	G		S									S	S		S	S																	.									G	G	G										S
Template Predicted Secondary structure																																															.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	T	H	L	P	T	G	I	V	V	E	C	Q	D	E	R	S	Q	H	K	N	K	A	K	A	L	S	V	L	G	A	R	I	H	A	A	E	M	A	K	R	Q	Q	A	E	A	S	T	R	R	N	L	L	G	S	G	D	R	S	D	R	N	R	T	Y	N	F	P	Q	G	R	V	T	D	H	R	I	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	V	H	L	P	T	G	I	M	V	T	C	Q	D	S	R	S	Q	I	K	N	R	E	K	A	L	M	I	L	R	S	R	L	L	E	M	K	R	A	E	E	A	E	R	L	R	K	T	R	L	A	Q	I	G	T	G	E	R	S	E	K	I	R	T	Y	N	F	P	Q	S	R	V	T	D	H	R	I	G	F
Template Known Secondary structure						T	T	T	T								S	S																																					S		G	G	G	G	S		S	S					T	T	T	T					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	Y	R	L	D	E	V	M	E	G	K	L	D	M	L	I	E	P	I	I	Q	E	H	Q	A	D	Q	L	A	A	L	S	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	H	D	L	E	G	V	L	S	G	H	L	T	P	I	L	E	A	L	K	R	A	D	Q	E	R	Q	L	A	A	L	A	E	G
Template Known Secondary structure										T	T	T																						S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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