Job Description P0A7I0 Confidence 100.00% Date Thu Jan 5 11:05:42 GMT 2012 Rank 3 Aligned Residues 338 % Identity 35% Template c2ihr1_ PDB info PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	A	L	H	E	R	H	E	E	V	Q	A	L	L	G	D	A	Q	T	I	A	D	Q	E	R	F	R	A	L	S	R	E	Y	A	Q	L	S	D	V	S	R	C	F	T	D	W	Q	Q	V	Q	E	D	I	E	T	A	Q	M	M	L	D	D	P	E	M	R	E	M	A	Q	D	E	L	R	E	A	K	E	K
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		I	P	Q	K	E	T	R	L	K	E	L	E	R	R	L	E	D	P	S	L	W	N	D	P	E	A	A	R	K	V	S	Q	E	A	A	R	L	R	R	T	V	D	T	F	R	S	L	E	S	D	L	Q	G	L	L	E	L	M	E	E	L	.	P	A	E	E	R	E	A	L	K	P	E	L	E	E	A	A	K	K
Template Known Secondary structure										T	T	T	T	T	S	T	T		G	G	G	T	T	T	G	G	G	S	S	S	T	T						T														T	T	T					T	T		S	.			T	T	G	G	G	T	G	G	G	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	Q	L	E	Q	Q	L	Q	V	L	L	L	P	K	D	P	D	D	E	R	N	A	F	L	E	V	R	A	G	T	G	G	D	E	A	A	L	F	A	G	D	L	F	R	M	Y	S	R	Y	A	E	A	R	R	W	R	V	E	I	M	S	A	S	E	G	E	H	G	G	Y	K	E	I	I	A	K	I	S	G
Query Conservation
Alig confidence			.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		L	.	.	.	.	D	E	L	Y	H	Q	T	L	L	N	F	P	H	A	E	K	N	A	I	L	T	I	Q	P	G	A	G	G	T	E	A	C	D	W	A	E	M	L	L	R	M	Y	T	R	F	A	E	R	Q	G	F	Q	V	E	V	V	D	L	T	P	G	P	E	A	G	I	D	Y	A	Q	I	L	V	K	G
Template Known Secondary structure			.	.	.	.									T		S	S	S	T	T	S										S	S	T																				T	T	T												S	S	S	S										S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		93					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	Y	G	R	L	K	F	E	S	G	G	H	R	V	Q	R	V	P	A	T	E	S	Q	G	R	I	H	T	S	A	C	T	V	A	V	M	P	E	L	P	D	A	E	L	P	D	I	N	P	A	D	L	R	I	D	T	F	R	S	S	G	A	G	G	Q	H	V	N	T	T	D	S	A	I	R	I	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	A	Y	G	L	L	S	P	E	A	G	V	H	R	L	V	R	P	S	P	F	D	A	S	G	R	R	H	T	S	F	A	G	V	E	V	I	P	E	V	D	E	E	V	E	V	V	L	K	P	E	E	L	R	I	D	V	M	R	A	S	G	P	G	G	Q	G	V	N	T	T	D	S	A	V	R	V	V	H
Template Known Secondary structure		T	T						G	G	G											T	T	S	S	S																		S	S	S	S					G	G	G											S	S			S	G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	T	G	I	V	V	E	C	Q	D	E	R	S	Q	H	K	N	K	A	K	A	L	S	V	L	G	A	R	I	H	A	A	E	M	A	K	R	Q	Q	A	E	A	S	T	R	R	N	L	L	G	S	G	D	R	S	D	R	N	R	T	Y	N	F	P	Q	G	R	V	T	D	H	R	I	N	L	T	L	Y	R
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		L	P	T	G	I	T	V	T	C	Q	T	T	R	S	Q	I	K	N	K	E	L	A	L	K	I	L	K	A	R	L	Y	E	L	E	R	K	K	R	E	E	E	L	K	A	.	L	R	G	E	V	R	P	I	E	W	G	S	Q	I	R	S	Y	V	L	D	K	N	Y	V	K	D	H	R	T	G	L	M	R	H	D
Template Known Secondary structure		T	T	T	T							S	S	S																													T	T	T	.	T	T			S			S				S		S					G	G	G	T					T	T	T					S
Template Predicted Secondary structure																																														.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	V	M	E	G	K	L	D	M	L	I	E	P	I	I	Q	E	H	Q	A	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	N	V	L	D	G	D	L	M	D	L	I	W	A	G	L	E	W	K	A	G	R	R
Template Known Secondary structure						T	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions