Job Description P0A7I0 Confidence 100.00% Date Thu Jan 5 11:05:42 GMT 2012 Rank 5 Aligned Residues 318 % Identity 44% Template c1zbtA_ PDB info PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution Resolution 2.34 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Q	T	I	A	D	Q	E	R	F	R	A	L	S	R	E	Y	A	Q	L	S	D	V	S	R	C	F	T	D	W	Q	Q	V	Q	E	D	I	E	T	A	Q	M	M	L	D	D	P	E	M	R	E	M	A	Q	D	E	L	R	E	A	K	E	K	S	E	Q	L	E	Q	Q	L	Q	V	L	L	L	P	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	X	N	I	Y	D	Q	L	Q	A	V	E	D	R	Y	E	E	L	R	E	E	A	N	S	R	E	T	V	A	V	Y	R	E	Y	K	Q	V	V	Q	N	I	A	D	A	Q	E	X	P	E	L	E	E	X	A	K	E	E	L	K	N	S	K	V	A	K	E	E	Y	E	E	K	L	R	F	L	L	L	P	K	D
Template Known Secondary structure																																																																											T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	D	E	R	N	A	F	L	E	V	R	A	G	T	G	G	D	E	A	A	L	F	A	G	D	L	F	R	M	Y	S	R	Y	A	E	A	R	R	W	R	V	E	I	M	S	A	S	E	G	E	H	G	G	Y	K	E	I	I	A	K	I	S	G	D	G	V	Y	G	R	L	K	F	E	S	G	G	H	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	D	D	K	N	I	I	L	E	I	R	G	A	A	G	G	D	E	A	A	L	F	A	G	D	L	L	N	X	Y	Q	K	Y	A	E	N	Q	G	W	K	F	E	V	X	E	A	S	A	N	G	V	G	G	L	K	E	V	V	A	X	V	S	G	Q	S	V	Y	S	K	L	K	Y	E	S	G	A	H	R	V
Template Known Secondary structure		T	T	T	T	S										T	T	T																						T												S	S	S											S	T	T						G	G	G
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	V	P	A	T	E	S	Q	G	R	I	H	T	S	A	C	T	V	A	V	M	P	E	L	P	D	A	E	L	P	D	I	N	P	A	D	L	R	I	D	T	F	R	S	S	G	A	G	G	Q	H	V	N	T	T	D	S	A	I	R	I	T	H	L	P	T	G	I	V	V	E	C	Q	D	E	R	S	Q	H
Query Conservation
Alig confidence																													.																		.	.	.	.	.	.	.	.	.
Template Conservation																													.																		.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	V	P	V	T	E	S	Q	G	R	V	H	T	S	T	A	T	V	L	V	X	P	E	V	E	E	.	V	E	Y	E	I	D	P	K	D	L	R	V	D	I	Y	H	A	.	.	.	.	.	.	.	.	.	K	V	A	T	A	V	R	I	I	H	L	P	T	N	I	K	V	E	X	Q	E	E	R	T	Q	Q
Template Known Secondary structure						T	T		S	S																		G	.	G	G	S				G	G	G									.	.	.	.	.	.	.	.	.											T	T	T	T							S	S	S	S
Template Predicted Secondary structure																													.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	K	A	K	A	L	S	V	L	G	A	R	I	H	A	A	E	M	A	K	R	Q	Q	A	E	A	S	T	R	R	N	L	L	G	S	G	D	R	S	D	R	N	R	T	Y	N	F	P	Q	G	R	V	T	D	H	R	I	N	L	T	L	Y	R	L	D	E	V	M	E	G	K	L	D	M	L	I	E	P	I
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		K	N	R	D	K	A	X	K	I	I	R	A	R	V	A	D	H	F	A	Q	I	A	Q	D	E	.	.	.	.	Q	D	A	T	V	G	T	G	D	R	S	E	R	I	R	T	Y	N	F	P	Q	N	R	V	T	D	H	R	I	G	L	T	L	Q	K	L	D	S	I	L	S	G	K	L	D	E	V	I	D	A	L
Template Known Secondary structure																											.	.	.	.	T					S		S		T	T	S							T	T	T	T					T	T	T	T				S							T	T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		345	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	E	H	Q	A	D	Q	L	A	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	Y	D	Q	T	Q	K	L	E	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions