Job Description P27300 Confidence 94.33% Date Thu Jan 5 11:43:46 GMT 2012 Rank 51 Aligned Residues 138 % Identity 16% Template c1nijA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yjia; PDBTitle: yjia protein Resolution 2.00 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	P	V	V	V	V	G	N	L	T	A	G	G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T	D	A	P	V	A	V	S
Query Conservation
Alig confidence									.	.																			.	.																												.	.	.	.	.	.	.							.	.
Template Conservation									.	.																			.	.																												.	.	.	.	.	.	.							.	.
Template Sequence		P	I	A	V	T	L	L	.	.	T	G	F	L	G	A	G	K	T	T	L	L	R	H	I	L	N	E	.	.	Q	H	G	Y	K	I	A	V	I	E	N	E	F	G	E	V	S	V	D	D	Q	L	I	G	D	R	A	.	.	.	.	.	.	.	T	Q	I	K	T	L	.	.	T	N	G	C	I	C	C	S	R
Template Known Secondary structure									.	.			S	S	S	S	S											S	.	.											S	S			S										T	T	S	.	.	.	.	.	.	.							.	.	T	T	S						T
Template Predicted Secondary structure									.	.																			.	.																												.	.	.	.	.	.	.							.	.
Template SS confidence
		3	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60			.	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.												.	.	150	.	.		.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure															.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.						.									.	.	.	.
Query SS confidence															.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.						.									.	.	.	.
Query Sequence		P	V	R	S	D	A	V	K	A	I	L	A	Q	.	.	.	.	.	H	P	D	V	Q	I	I	V	T	D	.	.	.	.	.	.	.	.	.	.	.	D	G	L	Q	H	.	Y	R	L	A	R	D	V	E	.	.	.	.	I	V	V	I	D	G	V	R	R	F	G	N	G	W	W	L	P	A	G	P	M	R	E
Query Conservation															.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.						.									.	.	.	.
Alig confidence															.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.						.									.	.	.	.																		.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		S	N	E	L	E	D	A	L	L	D	L	L	D	N	L	D	K	G	N	I	Q	F	D	R	L	V	I	E	C	T	G	M	A	D	P	G	P	I	I	Q	T	F	F	S	H	E	V	L	C	Q	R	Y	L	L	D	G	V	I	A	L	V	D	A	V	H	A	D	E	Q	M	N	Q	F	T	.	.	.	.	.	I
Template Known Secondary structure		T	S																T	S				S								T	T													S																		T	T	T										.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	G	R	L	K	S	V	D	A	V	I	V	N	G	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	S	Q	V	G	Y	A	D	R	I	L	L	T	K	T	D
Template Known Secondary structure								T		S							T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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