Job Description P76398 Confidence 100.00% Date Thu Jan 5 12:22:39 GMT 2012 Rank 5 Aligned Residues 194 % Identity 39% Template d1iwga7 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		D	S	I	R	Q	M	L	P	Q	L	T	E	S	L	P	K	S	.	.	.	V	K	V	T	V	L	S	D	R	T	T	N	I	R	A	S	V	D	D	T	Q	F	E	L	M	M	A	I	A	L	V	V	M	I	I	Y	L	F	L	R	N	I	P	A	T	I	I	P	G	V	A	V	P	L	S	L	I	G	T	F
Query Conservation																			.	.	.
Alig confidence																			.	.	.
Template Conservation
Template Sequence		R	P	I	F	A	W	V	I	A	I	I	I	M	L	A	G	G	L	A	I	L	K	L	P	V	A	Q	Y	P	T	P	F	V	K	I	S	I	H	E	V	V	K	T	L	V	E	A	I	I	L	V	F	L	V	M	Y	L	F	L	Q	N	F	R	A	T	L	I	P	T	I	A	V	P	V	V	L	L	G	T	F
Template Known Secondary structure																						T	T	S				S	S																													T	T				T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	V	M	V	F	L	D	F	S	I	N	N	L	T	L	M	A	L	T	I	A	T	G	F	V	V	D	D	A	I	V	V	I	E	N	I	S	R	Y	I	E	.	K	G	E	K	P	L	A	A	A	L	K	G	A	G	E	I	G	F	T	I	I	S	L	T	F	S	L	I	A	V	L	I	P	L	L	F	M	G
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		A	V	L	A	A	F	G	F	S	I	N	T	L	T	M	F	G	M	V	L	A	I	G	L	L	V	D	D	A	I	V	V	V	E	N	V	E	R	V	M	A	E	E	G	L	P	P	K	E	A	T	R	K	S	M	G	Q	I	Q	G	A	L	V	G	I	A	M	V	L	S	A	V	F	V	P	M	A	F	F	G
Template Known Secondary structure						T	T	T			S																																	T	S			S							G	G	G	T																	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	G	R	L	F	R	E	F	A	I	T	L	A	V	A	I	L	I	S	A	V	V	S	L	T	L	T	P	M	M	C	A	R	M	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	T	G	A	I	Y	R	Q	F	S	I	T	I	V	S	A	M	A	L	S	V	L	V	A	L	I	L	T	P	A	L	C	A	T	M	L	K
Template Known Secondary structure		T	T	S																						T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions