Job Description P76398 Confidence 100.00% Date Thu Jan 5 12:22:39 GMT 2012 Rank 2 Aligned Residues 989 % Identity 29% Template c1oy8A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump Resolution 3.63 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		M	R	P	V	A	T	T	L	L	M	V	A	I	L	L	A	G	I	I	G	Y	R	A	L	P	V	S	A	L	P	E	V	D	Y	P	T	I	Q	V	V	T	L	Y	P	G	A	S	P	D	V	M	T	S	A	V	T	A	P	L	E	R	Q	F	G	Q	M	S	G	L	K	Q	M	S	S	Q	S	.	S	G	G
Query Conservation																																																																														.
Alig confidence																																																																														.
Template Conservation
Template Sequence		D	R	P	I	F	A	W	V	I	A	I	I	I	M	L	A	G	G	L	A	I	L	K	L	P	V	A	Q	Y	P	T	I	A	P	P	A	V	T	I	S	A	S	Y	P	G	A	D	A	K	T	V	Q	D	T	V	T	Q	V	I	E	Q	N	M	N	G	I	D	N	L	M	Y	M	S	S	N	S	D	S	T	G
Template Known Secondary structure																							T	T	S				S	S				S											T	T										T							T					S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		A	S	V	I	T	L	Q	F	Q	L	T	L	P	L	D	V	A	E	Q	E	V	Q	A	A	I	N	A	A	T	N	L	L	P	S	D	L	P	N	P	P	V	Y	S	K	V	N	P	A	D	P	P	I	M	T	L	A	V	T	.	.	S	T	A	M	P	M	T	Q	V	E	D	M	V	E	T	R	V	A	Q	K
Query Conservation																																																												.	.
Alig confidence																																												.																.	.
Template Conservation																																												.
Template Sequence		T	V	Q	I	T	L	T	F	E	S	G	T	D	A	D	I	A	Q	V	Q	V	Q	N	K	L	Q	L	A	M	P	L	L	P	Q	E	V	Q	Q	Q	G	V	S	.	V	E	K	S	S	S	S	F	L	M	V	V	G	V	I	N	T	D	G	T	M	T	Q	E	D	I	S	D	Y	V	A	A	N	M	K	D	A
Template Known Secondary structure											T	T															T	T	T	G	G	G	S						T	S				.																	S	S	S				T	T								T	T	T
Template Predicted Secondary structure																																												.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		I	S	Q	I	S	G	V	G	L	V	T	L	S	G	G	Q	R	P	A	V	R	V	K	L	N	A	Q	A	I	A	A	L	G	L	T	S	E	T	V	R	T	A	I	T	G	A	N	V	N	S	A	K	G	S	L	.	.	.	.	.	.	D	G	P	S	R	A	V	T	L	S	A	N	D	Q	M	Q	S	A	E
Query Conservation																																																									.	.	.	.	.	.
Alig confidence																	.																																								.	.	.	.	.	.
Template Conservation																	.
Template Sequence		I	S	R	T	S	G	V	G	D	V	Q	L	F	G	S	.	Q	Y	A	M	R	I	W	M	N	P	N	E	L	N	K	F	Q	L	T	P	V	D	V	I	T	A	I	K	A	Q	N	A	Q	V	A	A	G	Q	L	G	G	T	P	P	V	K	G	Q	Q	L	N	A	S	I	I	A	Q	T	R	L	T	S	T	E
Template Known Secondary structure			T	T	T	T	T							S	S		.															T	T	T														S									S		S	S			T	T															S
Template Predicted Secondary structure																	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		249	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		E	Y	R	Q	L	I	I	.	A	Y	Q	N	G	A	P	I	R	L	G	D	V	A	T	V	E	Q	G	A	E	N	S	W	L	G	A	W	A	N	K	E	Q	A	I	V	M	N	V	Q	R	Q	P	G	A	N	I	I	S	T	A	D	S	I	R	Q	M	L	P	Q	L	T	E	S	L	P	K	S	V	K	V	T
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		E	F	G	K	I	L	L	K	V	N	Q	D	G	S	R	V	L	L	R	D	V	A	K	I	E	L	G	G	E	N	Y	D	I	I	A	E	F	N	G	Q	P	A	S	G	L	G	I	K	L	A	T	G	A	N	A	L	D	T	A	A	A	I	R	A	E	L	A	K	M	E	P	F	F	P	S	G	L	K	I	V
Template Known Secondary structure					T							T	T	T																S			S						T	T												T	T			T					S			S		S	S	T	T	T	S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	S	D	R	T	T	N	I	R	A	S	V	D	D	T	Q	F	E	L	M	M	A	I	A	L	V	V	M	I	I	Y	L	F	L	R	N	I	P	A	T	I	I	P	G	V	A	V	P	L	S	L	I	G	T	F	A	V	M	V	F	L	D	F	S	I	N	N	L	T	L	M	A	L	T	I	A	T	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	Y	D	T	T	P	F	V	K	I	S	I	H	E	V	V	K	T	L	V	E	A	I	I	L	V	F	L	V	M	Y	L	F	L	Q	N	F	R	A	T	L	I	P	T	I	A	V	P	V	V	L	L	G	T	F	A	V	L	A	A	F	G	F	S	I	N	T	L	T	M	F	G	M	V	L	A	I	G	L
Template Known Secondary structure				S	B	S																																	T	T	T	T	T	T	T	T	T	T																T			S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		V	V	D	D	A	I	V	V	I	E	N	I	S	R	Y	I	.	E	K	G	E	K	P	L	A	A	A	L	K	G	A	G	E	I	G	F	T	I	I	S	L	T	F	S	L	I	A	V	L	I	P	L	L	F	M	G	D	I	V	G	R	L	F	R	E	F	A	I	T	L	A	V	A	I	L	I	S	A	V	V
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		L	V	D	D	A	I	V	V	V	E	N	V	E	R	V	M	A	E	E	G	L	P	P	K	E	A	T	R	K	S	M	G	Q	I	Q	G	A	L	V	G	I	A	M	V	L	S	A	V	F	V	P	M	A	F	F	G	G	S	T	G	A	I	Y	R	Q	F	S	I	T	I	V	S	A	M	A	L	S	V	L	V
Template Known Secondary structure																				T				S							T																T	T	T	S	T	T	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	L	T	P	M	M	C	A	R	M	L	S	Q	E	S	L	R	K	Q	N	R	F	S	R	A	S	E	K	M	F	D	R	I	I	A	A	Y	G	R	G	L	A	K	V	L	N	H	P	W	L	T	L	S	V	A	L	S	T	L	L	L	S	V	L	L	W	V	F	I	P	K	G	F	F	P	V	Q	D
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	I	L	T	P	A	L	C	A	T	M	L	K	F	G	W	F	N	.	.	.	.	.	.	.	.	.	.	R	M	F	E	K	S	T	H	H	Y	T	D	S	V	G	G	I	L	R	S	T	G	R	Y	L	V	L	Y	L	I	I	V	V	G	M	A	Y	L	F	V	R	L	P	S	S	F	L	P	D	E	D
Template Known Secondary structure		T	T	T									S								.	.	.	.	.	.	.	.	.	.								T																																	S	S		B		S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.											.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.			.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.				.	.	640	.
Predicted Secondary structure																																.	.																																										.	.	.
Query SS confidence																																.	.																																										.	.	.
Query Sequence		N	G	I	I	Q	G	T	L	Q	A	P	Q	S	S	S	F	A	N	M	A	Q	R	Q	R	Q	V	A	D	V	I	.	.	L	Q	D	P	A	V	Q	S	L	T	S	F	V	G	V	D	G	T	N	P	S	L	N	S	A	R	L	Q	I	N	L	K	P	L	D	E	R	D	D	R	V	.	.	.	Q	K	V	I
Query Conservation																																.	.																																										.	.	.
Alig confidence																																.	.																																										.	.	.
Template Conservation
Template Sequence		Q	G	V	F	M	T	M	V	Q	L	P	A	G	A	T	Q	E	R	T	Q	K	V	L	N	E	V	T	H	Y	Y	L	T	K	E	K	N	N	V	E	S	V	F	A	V	N	G	F	G	F	A	G	R	G	Q	N	T	G	I	A	F	V	S	L	K	D	W	A	D	R	P	G	E	E	N	K	V	E	A	I	T
Template Known Secondary structure			S										T	T																			T	S		T	T	T												S	S																G	G	G			S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.		.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		A	R	L	Q	T	A	V	D	K	V	P	G	V	D	L	F	L	Q	P	T	Q	D	L	T	I	D	T	Q	V	S	R	T	Q	Y	Q	.	F	T	L	Q	A	T	S	L	D	A	L	S	T	W	V	P	Q	L	M	E	K	L	Q	Q	L	P	Q	L	S	D	V	S	S	D	W	Q	D	K	G	L	V	A	Y	V
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		M	R	A	T	R	A	F	S	Q	I	K	D	A	M	V	F	A	F	N	L	P	A	I	V	E	L	G	T	A	T	G	F	D	F	E	L	I	D	Q	A	G	L	G	H	E	K	L	T	Q	A	R	N	Q	L	L	A	E	A	A	K	H	P	M	L	T	S	V	R	P	N	G	L	E	D	T	P	Q	F	K	I
Template Known Secondary structure									T	T	S		S	S					B				S	S		S	S			S	S										S	S																														S
Template Predicted Secondary structure
Template SS confidence
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	D	R	D	S	A	S	R	L	G	I	S	M	A	D	V	D	N	A	L	Y	N	A	F	G	Q	R	L	I	S	T	I	Y	T	Q	A	N	Q	Y	R	V	V	L	E	H	N	T	E	N	T	P	G	L	A	A	L	D	T	I	R	L	T	S	S	D	G	G	V	V	P	L	S	S	I	A	K	I	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	D	Q	E	K	A	Q	A	L	G	V	S	I	N	D	I	N	T	T	L	G	A	A	W	G	G	S	Y	V	N	D	F	I	D	R	G	R	V	K	K	V	Y	V	M	S	E	A	K	Y	R	M	L	P	D	D	I	G	D	W	Y	V	R	A	A	D	G	Q	M	V	P	F	S	A	F	S	S	S	R	W
Template Known Secondary structure												T															T										T	T											G	G	G	S	S	S	G	G	G	G	G	G						T	T	S
Template Predicted Secondary structure
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	A	P	L	S	I	N	H	L	D	Q	F	P	V	T	T	I	S	F	N	V	P	D	N	Y	S	L	G	D	A	V	Q	A	I	M	D	T	E	K	T	L	N	L	P	V	D	I	T	T	Q	F	Q	G	S	T	L	A	F	Q	S	A	L	G	S	T	V	W	L	I	V	A	A	V	V	A	M	Y	I	V
Query Conservation
Alig confidence																																										.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	G	S	P	R	L	E	R	Y	N	G	L	P	S	M	E	I	L	G	Q	A	A	P	G	K	S	T	G	E	A	M	E	L	M	E	Q	L	A	S	.	.	K	L	P	T	G	V	G	Y	D	W	S	G	N	Q	A	P	S	.	.	.	.	.	.	.	.	.	L	Y	A	I	S	L	I	V	V	F	L	C
Template Known Secondary structure						S						T	T												S	S	S		T													.	.	T	S		T	T								T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.			850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.										.	.	.	870	.	.	.	.	.	.	.	.
		881	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	L	Y	E	S	F	I	H	P	I	T	I	L	S	T	L	P	T	A	G	V	G	A	L	L	A	L	L	I	A	G	S	E	L	D	V	I	A	I	I	G	I	I	L	L	I	G	I	V	K	K	N	A	I	M	M	I	D	F	A	L	A	A	E	R	E	Q	G	M	S	P	R	E	A	I	Y	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A
Template Known Secondary structure		T	T	S	S			S	S	S	G	G	G	T	G	G	G																S	S			B																															S	S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		888	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
		961	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	L	R	F	R	P	I	L	M	T	T	L	A	A	L	L	G	A	L	P	L	M	L	S	T	G	V	G	A	E	L	R	R	P	L	G	I	G	M	V	G	G	L	I	V	S	Q	V	L	T	L	F	T	T	P	V	I	Y	L	L	F	D	R	L	A	L	W	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure			T	T	T															S					T	T			S	S		S																					T	S	S	S	S	S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		968	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.