|   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | |
|
. | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
S | Q | R | D | A | L | N | Q | S | L | A | E | V | Q | G | Q | I | N | V | S | F | E | F | F | P | P | R | T | S | E | M | E | Q | T | L | W | N | S | I | D | R | L | S | S | L | K | P | K | F | V | S | V | . |
. |
T | Y | G | A | N | S | G | E | R | D | R | T | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |
|   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|
|
| . | . |
|   |   |   |   |   |   |   |
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |
|   |   |   |   |   | . | . |   |   |   |   |
|
|
|   |
|
|
|
| . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
T | T | L | E | A | F | A | K | A | R | S | . |
. |
E | G | R | A | A | L | I | P | Y | L | T | A | . |
. |
G | F | P | S | R | E | G | F | L | Q | A | V | E | E | V | L | P | . |
Y | A | D | L | L | E | I | G | L | P | Y | S | D | G | P | V | I | Q | R | A | S | E | L | A | L | R | K | G | M | S | V | Q | G | A | L |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | . | . | T | T | B |
|  |  |  |  |  |  |  | T | . | . | T | S | S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | . | G |
| S | S |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|  |  |  |  |  |  |
| . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | |
|
. | . | . | . | . | . | . | 20 | . | . | . | . | |
|
. | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | I | I | K | G | I | K | D | R | T | G | L | E | A | A | P | H | L | T | C | I | D | A | T | P | D | E | L | R | T | I | A | R | D | Y | W | N | N | G | I | R | H | I | V | A | L | R | G | D | L | P | P | G | S | G | K | P | E | M | Y | A | S | D | L | V | T | L | L | K | E | V | A | D | F | D | I | S | V | A | A |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|
|
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|   |
|   |
|   |   |   |
|   |
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |
|
|   |   |
Template Sequence |   |
E | L | V | R | E | V | R | A | L | T | E | K | P | L | F | L | M | T | Y | L | N | P | V | L | A | W | G | P | E | R | F | F | G | L | F | K | Q | A | G | A | T | G | V | I | L | P | . |
. |
. |
. |
. |
. |
. |
. |
D | L | P | P | D | E | D | P | G | L | V | R | L | A | Q | E | I | . |
. |
. |
. |
. |
G | L | E | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
| S |
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
| T | . | . | . | . | . | . | . | . | T |
|
| G | G | G |
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | T |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
|
|
|
|
. | . | . | . |
  |
  |   |
152 | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | P | E | V | H | P | E | A | K | S | A | Q | A | D | L | L | N | L | K | R | K | V | D | A | G | A | N | R | A | I | T | Q | F | F | F | D | V | E | S | Y | L | R | F | R | D | R | C | V | S | A | G | I | D | V | E | I | I | P | G | I | L | P | V | S | N | F | K | Q | A | K | K | F | A | D | M | T | N | V | R | I |
Query Conservation |   |
  |
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|
|
|   |
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|   | . | . | . | . | . |   |   |
|
|   |   |
|   |   |   |
|   |
|
|
|
|   |
|
|   | . | . | . | . |   |
|   |   |   |
|   |   |
|
|   |   |
| . |   |   |
|
|   |
|
|
| . |
|
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|
Template Sequence |   |
V | F | L | L | A | P | T | S | T | . |
. |
. |
. |
. |
D | A | R | I | A | T | V | V | R | H | A | T | G | F | V | Y | A | V | S | V | . |
. |
. |
. |
E | V | K | D | L | V | R | R | I | K | A | R | T | . |
A | L | P | V | A | V | G | F | . |
G | V | S | G | K | A | T | A | A | Q | A | A | V | A | D | G | V | V | V |
Template Known Secondary structure |   |
 |
|  |  |
| T | T |
|
| . | . | . | . | . |  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |  |  |  | T | T |
| . |
| S |
|  |  |  |  | S | . |
|
|
| S |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
148 | . | 150 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
|
|
. | . | . | 180 | . | . | . | . | . | . | . | . | . | |
190 | . | . | . | . | . | . | . | |
. | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . |
  |
  |   |
232 | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | W | M | A | Q | M | F | D | G | L | D | D | D | A | E | T | R | K | L | V |
Query Conservation |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
G | S | A | L | V | R | A | L | E | E | G | R | S | L | A | P | L | L | Q | E | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
229 | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
  |