Job Description P0AEZ1 Confidence 88.78% Date Thu Jan 5 11:24:40 GMT 2012 Rank 23 Aligned Residues 196 % Identity 13% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.																															.
Query SS confidence																								.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.																															.
Query Sequence		M	E	Q	T	L	W	N	S	I	D	R	L	S	S	L	K	P	K	F	V	S	V	.	.	.	.	.	.	.	.	T	Y	G	A	N	.	.	.	.	.	.	.	.	S	G	E	R	D	R	T	H	S	I	I	K	G	I	K	D	R	T	G	L	E	A	A	P	H	L	T	C	I	D	.	A	T	P	D	E	L
Query Conservation																								.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.																															.
Alig confidence																								.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	K	T	K	K	A	L	V	F	X	V	Y	Y	N	L	I	F	S	Y	G	L
Template Known Secondary structure												T	G	G	G	S	S		S								S	S					S	S													T	T												T				S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	I	A	R	D	Y	W	N	N	G	I	R	H	I	V	A	L	R	G	D	L	P	P	G	S	G	K	P	E	M	Y	A	S	D	L	V	T	L	L	K	E	V	A	D	F	D	I	S	V	A	A	Y	P	E	V	H	P	E	A	K	S	A	Q	A	D	L	L	N	L	K	R	K	V	D	A	G	A	N	R
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																			.											.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.																			.											.	.	.	.	.	.	.
Template Sequence		E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	.	.	.	.	.	.	P	E	L	S	F	E	E	S	D	D	L	I	K	E	C	E	R	Y	.	N	I	A	L	I	T	L	V	S	V	.	.	.	.	.	.	.	T	T	P	K	E	R	V	K	K	L	V	K	H	A	K	G	F	I	Y
Template Known Secondary structure											T	T							.	.	.	.	.	.	.	.	T	T			G	G	G												.	T									T	.	.	.	.	.	.	.	T	S										T	T			S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																			.											.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure											.	.	.	.	.	.																																								.
Query SS confidence											.	.	.	.	.	.																																								.
Query Sequence		A	I	T	Q	F	F	F	D	V	.	.	.	.	.	.	E	S	Y	L	R	F	R	D	R	C	V	S	A	G	I	D	V	E	I	I	P	G	I	L	P	V	S	N	F	K	Q	A	K	K	F	A	D	M	T	.	N	V	R	I	P	A	W	M	A	Q	M	F	D	G	L	D	D	D	A	E	T	R	K	L	V
Query Conservation											.	.	.	.	.	.																																								.
Alig confidence											.	.	.	.	.	.														.									.																	.														.	.
Template Conservation																														.									.																															.	.
Template Sequence		L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	Q	D	K	V	K	E	I	R	S	F	.	T	N	L	P	I	F	V	G	.	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V	I	V	G	T	S	I	V	K	C	F	K	.	.	Q	G	N	L	D	I	I	X	K	D
Template Known Secondary structure						S		S	S																			T	T	.			S						.	S	S			S	S							T	T	T	S	S												T	T	.	.	S	S
Template Predicted Secondary structure																														.									.																															.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions