Job Description P0AEZ1 Confidence 21.35% Date Thu Jan 5 11:24:40 GMT 2012 Rank 200 Aligned Residues 246 % Identity 10% Template c3n2xB_ PDB info PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate Resolution 2.20 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		F	P	P	R	T	S	E	M	E	Q	T	L	W	N	S	I	D	R	L	S	S	L	K	P	K	F	V	S	V	T	Y	G	A	N	S	G	E	R	D	R	T	.	.	.	H	S	I	I	K	G	I	K	D	R	T	G	L	E	A	A	P	H	L	T	C	I	D	A	T	P	D	E	L	R	T	I	A	R	D	Y
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		F	T	A	D	G	Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A
Template Known Secondary structure		B		T	T	S		B															T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	N	G	I	R	H	I	V	A	L	R	G	D	L	P	P	G	S	G	K	P	E	M	Y	A	S	D	L	V	T	L	L	K	E	V	A	D	F	D	I	S	V	A	A	Y	P	E	V	H	P	E	A	K	S	A	Q	A	D	L	L	N	L	K	R	K	V	D	A	G	A	N	R	A	I	T	Q	F	F	F
Query Conservation
Alig confidence													.	.	.																																										.	.	.	.
Template Conservation													.	.	.																																										.	.	.	.
Template Sequence		Q	Q	A	G	A	D	G	I	V	V	I	.	.	.	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	M	L	Y	N	F	P	A	L	T	G	Q	D	L	T	.	.	.	.	P	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	D	T	I	D
Template Known Secondary structure					T		S						.	.	.			S	S	S																	T		S	S												S	S				.	.	.	.												T	T								S
Template Predicted Secondary structure													.	.	.																																										.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.						.	.
Query SS confidence																																									.	.	.	.	.						.	.
Query Sequence		D	V	E	S	Y	L	R	F	R	D	R	C	V	S	A	G	I	D	V	E	I	I	P	G	I	L	P	V	S	N	F	K	Q	A	K	K	F	A	D	.	.	.	.	.	M	T	N	V	R	.	.	I	P	A	W	M	A	Q	M	F	D	G	L	D	D	D	A	E	T	R	K	L	V	G	A	N	I	A	M	D
Query Conservation																																									.	.	.	.	.						.	.
Alig confidence																										.	.	.	.												.	.	.	.	.						.	.																	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence		S	V	A	H	L	R	S	M	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	.	.	.	.	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G	D	.	.	.	.	.	.	.	V	A	K	A	A	G
Template Known Secondary structure																		T	T		B				S	.	.	.	.	S	G	G	G							T	T							G	G	G	T	T															T		.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	K	I	L	S	R	E	G	V	K	D	F	H	F	Y	T	L	N	R	A	E	M	S	Y	A	I	C	H	T	L	G	V	R	P	G
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		Y	H	Q	T	L	L	Q	I	.	.	P	Q	M	Y	Q	L	D	T	P	F	V	N	V	I	K	E	A	I	V	L	C	G	R	P	V	S
Template Known Secondary structure									G	.	.	G	G	G	G	G	G	S	S	S												T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		248	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions