 |
Job Description | P0AEZ1 | Confidence | 72.23% | Date | Thu Jan 5 11:24:40 GMT 2012 |
Rank | 53 | Aligned Residues | 131 |
% Identity | 18% | Template | c3g0sA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2
|
Resolution | 1.85 Å |
|
 |
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | T | P | D | E | L | R | T | I | A | R | D | Y | W | N | N | G | I | R | H | I | V | A | L | R | G | D | L | P | P | G | S | G | K | P | E | M | Y | A | S | D | L | V | T | L | L | K | E | V | A | D | F | D | I | S | V | A | A | Y | P | E | V | H | P | E | A | K | S | A | Q | A | D | L | L | N | L | K | R | K |
Query Conservation |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|
|
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|   |   | . |   |
|
|
|
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
| . | . | . | . |   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|
Template Sequence |   |
N | V | S | R | S | C | L | K | K | L | I | D | Y | H | V | A | N | G | T | S | A | I | V | S | . |
V | G | T | T | G | E | S | A | T | L | S | H | D | E | H | G | D | V | V | M | M | T | L | E | L | A | D | G | R | I | P | V | I | . |
. |
. |
. |
A | G | T | G | A | N | A | T | A | E | A | I | S | L | T | Q | R | F |
Template Known Secondary structure |   |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | . | S | S | T | T | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  | . | . | . | . |  |  |
|
|
| S | S |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
|
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | |
|
|
|
. | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | D | A | G | A | N | R | A | I | T | Q | F | F | F | . |
. |
. |
. |
D | V | E | S | Y | L | R | F | R | D | R | C | V | S | A | G | I | D | V | E | I | I | P | G | I | L | P | V | . |
. |
. |
. |
. |
S | N | F | K | Q | A | K | K | F | A | D | M | T | N | V |
Query Conservation |   |
  |   |
|
|
|   |
|   |
|
|
|   |   |
| . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |
|
|   |
|   | . | . | . | . | . |   |
|   |
|   |   |   |   |   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
|   |
|   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   | . |   |   |   |
|
|   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
Template Sequence |   |
N | D | S | G | I | V | G | C | L | T | V | T | P | Y | Y | N | R | P | T | Q | E | G | L | F | Q | H | F | K | A | I | A | E | H | . |
T | D | L | P | Q | I | L | Y | N | V | P | S | R | T | G | C | D | M | L | P | E | T | V | G | R | L | A | E | I | K | N | I |
Template Known Secondary structure |   |
T | T | S | S |
|
|  |  |  |  |  |
|
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | . |
| S | S |
|  |  |  |  |  |
|  |  |  |  | S |
|
|
|
|  |  |  |  |  |  |  |  | T | S | T | T |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | |
. | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|