Job Description P0AEZ1 Confidence 96.86% Date Thu Jan 5 11:24:40 GMT 2012 Rank 6 Aligned Residues 227 % Identity 13% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.												.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	R	D	A	L	N	Q	S	L	A	E	V	Q	G	Q	I	N	V	S	F	E	F	F	P	P	R	T	S	E	M	E	Q	T	L	W	N	S	I	D	R	L	S	S	L	K	P	K	F	V	S	V	.	.	.	.	.	.	.	.	T	Y	G	A	N	.	.	.	.	.	.	.	.	.	.	.	S	G	E	R
Query Conservation																																																						.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.													.	.																										.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.													.	.
Template Sequence		G	R	I	S	D	K	F	T	E	L	K	E	.	K	R	E	K	A	L	V	S	Y	L	M	V	.	.	G	Y	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F
Template Known Secondary structure														.		T	B									T	.	.	T	S	S															T	T		S									S			T	T	S														T	T
Template Predicted Secondary structure														.													.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		D	R	T	H	S	I	I	K	G	I	K	D	R	T	G	L	E	A	A	P	H	L	T	C	I	D	.	A	T	P	D	E	L	R	T	I	A	R	D	Y	W	N	N	G	I	R	H	I	V	A	L	R	G	D	L	P	P	G	S	G	K	P	E	M	Y	A	S	D	L	V	T	L	L	K	E	V	A	D	F	D
Query Conservation																												.
Alig confidence																												.																							.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		E	D	V	L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	.	.	.	.	.	.	.	.	V	P	D	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	.	.	.	.
Template Known Secondary structure																T	T	S																										T	T						.	.	.	.	.	.	.	.		T	T																T	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	V	A	A	Y	P	E	V	H	P	E	A	K	S	A	Q	A	D	L	L	N	L	K	R	K	V	D	A	G	A	N	R	A	I	T	Q	F	F	F	D	V	E	S	Y	L	R	F	R	D	R	C	V	S	A	G	I	D	V	E	I	I	P	G	I	L	P	V	S	N	F	K	Q	A	K	K	F	A	D	M
Query Conservation
Alig confidence		.														.	.	.	.	.																																					.											.
Template Conservation		.														.	.	.	.	.																																					.											.
Template Sequence		.	V	L	S	F	V	P	L	G	A	P	T	S	T	.	.	.	.	.	R	K	R	I	K	L	I	C	E	A	A	D	E	M	T	Y	F	V	S	V	T	G	Y	E	R	I	K	K	K	V	E	E	Y	R	E	L	.	C	D	K	P	V	V	V	G	F	G	.	V	S	K	K	E	H	A	R	E	I	G	S	F
Template Known Secondary structure		.	T									T	T			.	.	.	.	.												S	S						S	S																	.			S						S	S	.			S									T	T
Template Predicted Secondary structure		.														.	.	.	.	.																																					.											.
Template SS confidence
			147	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.
		227		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	N	V	R	I	P	A	W	M	A	Q	M	F	D	G	L	D	D	D	A	E	T	R	K	L	V	G	A	N	I	A	M	D	M	V	K	I	L	S	R
Query Conservation			.
Alig confidence			.																.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	.	.	.	.	.	.	.	.	.	.	K	I	E	D	L	G	N	L	V	K	E	L	K	E
Template Known Secondary structure		S	S														T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.											.	.	.	.	.	250	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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