Job Description P32139 Confidence 98.06% Date Thu Jan 5 11:49:25 GMT 2012 Rank 20 Aligned Residues 227 % Identity 10% Template c3bs6B_ PDB info PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc Resolution 1.80 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.
Query Sequence		S	G	Q	T	V	S	L	A	A	G	D	Y	H	A	T	I	V	T	V	G	A	G	L	A	E	L	T	F	.	.	.	.	.	.	.	.	Q	G	C	H	L	V	I	P	H	K	P	E	E	M	P	L	A	H	L	G	K	V	L	I	P	W	P	N	R	I	A	N	G	C	Y	R	Y	Q	G	Q	E	Y	Q	L
Query Conservation																														.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S							T	B	T	T												S	S	T	T			S					S				T	T											S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																										.	.																																			.
Query SS confidence																										.	.																																			.
Query Sequence		P	I	N	E	H	S	S	K	A	A	I	H	G	L	L	A	W	R	D	W	Q	I	S	E	.	.	L	T	A	T	S	V	T	L	T	A	F	L	P	P	S	Y	G	Y	P	F	M	L	A	S	Q	V	V	Y	S	L	N	A	H	T	.	G	L	S	V	E	I	A	S	Q	N	I	G	T	V	A	A	P	Y	G
Query Conservation																										.	.																																			.
Alig confidence		.	.																							.	.																		.	.	.	.														.																	.	.
Template Conservation		.	.																																										.	.	.	.																															.	.
Template Sequence		.	.	D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K	D	A	Y	V	L	A	E	G	Q	N	E	L	Q	V	P	X	T	Y	T	D	A	A	G	.	.	.	.	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V	Q	N	A	G	E	K	P	L	.	.	E
Template Known Secondary structure		.	.	T		T	T	S	G	G	G	S	S			B		B		S		S						T	T		S											T	T		.	.	.	.											T	T														S	S	S			.	.
Template Predicted Secondary structure		.	.																																										.	.	.	.																															.	.
Template SS confidence
				118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	I	H	P	Y	L	T	C	N	L	T	S	V	D	E	Y	L	F	Q	L	P	A	N	Q	V	Y	A	V	D	E	H	A	N	P	T	T	L	H	H	V	D	E	L	D	L	N	F	T	Q	A	K	K	I	A	A	T	K	I	D	H	T	F	K	T	A	N	D	L	W	E	M	T	I	T	H	P	Q	Q	A
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	S	F	G	Q	L	K	Q	S	I	T	L	F	R	G	A	A	Y	S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D	N	E	N	L	N	I	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Template Known Secondary structure												S											T	T	T												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																																				.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	S	L	C	S	D	Q	L	W	V	Q	V	Y	S	G	E	K	L	Q	R	Q	G	L	A	V	E	P	M	S	C	P	P	N	A	F	N	S	G	I	D	L	L	L	L	E	S	G	K	P	H	R	L	F	F	N	I	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	W	V	A	X	L	Q	Q	Y	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	S	Q	P	V	L	V	Q	P	G	Q	T	G	A	X	N	S	T	L	W	V
Template Known Secondary structure		S								T	T										S	S											T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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