Job Description P32139 Confidence 98.14% Date Thu Jan 5 11:49:25 GMT 2012 Rank 19 Aligned Residues 230 % Identity 12% Template c3blcB_ PDB info PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc Resolution 2.50 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.								.																									.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.								.																									.	.	.
Query Sequence		S	G	Q	T	V	S	L	A	A	G	D	Y	H	A	T	I	V	T	V	G	A	G	L	A	E	L	T	F	.	.	.	.	.	.	.	.	Q	G	C	H	L	V	I	.	P	H	K	P	E	E	M	P	L	A	H	L	G	K	V	L	I	P	W	P	N	R	I	A	.	.	.	N	G	C	Y	R	Y	Q	G	Q
Query Conservation																														.	.	.	.	.	.	.	.								.																									.	.	.
Alig confidence																														.	.	.	.	.	.	.	.								.																									.	.	.
Template Conservation
Template Sequence		Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	Q	A	Q	S	G	L	T	G	R	D	G	P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K	D
Template Known Secondary structure											S	S							T	B	T													S	S	T	T		S	S				S	S				S	S											S	T	T		T	T	S	G	G	G		S			B		B		S		S
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		E	Y	Q	L	P	I	N	E	H	S	S	K	A	A	I	H	G	L	L	A	W	R	D	W	Q	I	S	E	L	T	A	T	S	V	T	L	T	A	F	L	P	P	S	Y	G	Y	P	F	M	L	A	S	Q	V	V	Y	S	L	N	.	A	H	T	G	L	S	V	E	I	A	S	Q	N	I	G	T	V	A	A	P
Query Conservation																																																													.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.												.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		A	Y	V	L	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	N	E	L	Q	V	P	X	T	Y	T	D	A	A	.	.	.	.	.	.	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V	Q	N	A	G	E	K	P	L	E
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T													T	T	.	.	.	.	.	.	S											T	T														S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.																						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	V	G	I	H	P	Y	L	T	C	N	L	T	S	V	D	E	Y	L	F	Q	L	P	A	N	Q	V	Y	A	V	D	E	H	A	N	P	T	T	L	H	H	V	D	E	L	D	L	N	F	T	Q	A	K	K	I	A	A	T	K	I	D	H	T	F	K	T	A	N	D	L	W	E	M	T	I	T	H	P	Q
Query Conservation
Alig confidence				.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	.	.	.	.	S	F	G	Q	L	K	Q	S	I	T	L	P	P	H	L	T	F	R	G	A	A	Y	S	T	P	D	A	A	Y	A	A	Y	A	F	D	T	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	N	L	N	I	S	S	K	G	G	W	V	A	X	L	Q	Q	Y
Template Known Secondary structure				.	.	.	.									S	S															T	T													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S								T	T
Template Predicted Secondary structure				.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230																	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	S	V	S	L	C	S	D	Q	L	W	V	Q	V	Y	S	G	E	K	L	Q	R	Q	G	L	A	V	E	P	M	S	C	P	P	N	A	F	N	S	G	I	D	L	L	L	L	E	S	G	K	P	H	R	L	F	F	N	I	Y	G
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	P	V	L	V	Q	P	G	Q	T	G	A	X	N	S	T	L	W	V
Template Known Secondary structure											S	S										S	T	T								.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.													290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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