Job Description P76373 Confidence 100.00% Date Thu Jan 5 12:22:27 GMT 2012 Rank 3 Aligned Residues 374 % Identity 25% Template c3prjB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase. Resolution 3.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																							.				.	.																																	.
Query SS confidence																							.				.	.																																	.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	.	.	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	.	D	K	I	H	F	N	A	T	L	D	K	N	E	A	Y	R	D	A	D	Y
Query Conservation																							.				.	.																																	.
Alig confidence																							.				.	.																																	.
Template Conservation
Template Sequence		K	K	I	C	C	I	G	A	G	Y	V	G	G	P	T	C	S	V	I	A	H	M	C	P	E	I	R	V	T	V	V	D	V	N	E	S	R	I	N	A	W	N	S	P	T	L	P	I	Y	E	P	G	L	K	E	V	V	E	S	C	R	G	K	N	L	F	F	S	T	N	I	D	D	A	I	K	E	A	D	L
Template Known Secondary structure										S	T	T													T	T	S							S										S	S	S		S	S			T	T									B	T	T	T					S								T		S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure															.	.	.	.																		.																												.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																		.																												.	.	.	.	.	.	.
Query Sequence		V	I	I	A	T	P	T	D	Y	D	P	K	T	.	.	.	.	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	.	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	.	.	.	.	.	.	.	E	N	I	I	F	S	P	E	F	L	R
Query Conservation															.	.	.	.																		.																												.	.	.	.	.	.	.
Alig confidence															.	.	.	.																		.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	I	S	V	N	T	P	T	K	T	Y	G	M	G	K	G	R	A	A	D	L	K	Y	I	E	A	C	A	R	R	I	V	Q	N	S	N	G	Y	K	I	V	T	E	K	S	T	V	P	V	R	A	A	E	S	I	R	R	I	F	D	A	N	T	K	P	N	L	N	L	Q	V	L	S	N	P	E	F	L	A
Template Known Secondary structure										B		S	S	S	T	T	T	T	T	S	B		T													T			S									S	S			S												S			S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		E	G	K	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	.	.	.	.	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	A	N	T	Y	L	A	M	R	V	A	Y	F	N	E	L	D	S	Y	A	E	S
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.																				.
Template Conservation																																													.
Template Sequence		E	G	T	A	I	K	D	L	K	N	P	D	R	V	L	I	G	G	D	E	T	P	E	G	Q	R	A	V	Q	A	L	C	A	V	Y	E	H	W	V	P	R	E	K	.	I	L	T	T	N	T	W	S	S	E	L	S	K	L	A	A	N	A	F	L	A	Q	R	I	S	S	I	N	S	I	S	A	L	C	E	A
Template Known Secondary structure		T	T	S							S		S								S	S																T	T	S		G	G	G	.
Template Predicted Secondary structure																																													.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																										.	.
Query SS confidence																																																			.	.	.	.																										.	.
Query Sequence		L	G	L	N	S	R	Q	I	I	E	G	V	C	L	D	P	R	I	G	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	A	N	Y	Q	S	V	P	.	.	.	.	N	N	L	I	S	A	I	V	D	A	N	R	T	R	K	D	F	I	A	D	A	I	L	S	R	.	.
Query Conservation																																																			.	.	.	.																										.	.
Alig confidence																																																			.	.	.	.																										.	.
Template Conservation
Template Sequence		T	G	A	D	V	E	E	V	A	T	A	I	G	M	D	Q	R	I	G	N	K	F	L	K	A	S	V	G	F	G	G	S	C	F	Q	K	D	V	L	N	L	V	Y	L	C	E	A	L	N	L	P	E	V	A	R	Y	W	Q	Q	V	I	D	M	N	D	Y	Q	R	R	R	F	A	S	R	I	I	D	S	L	F
Template Known Secondary structure			T												T		T	T	T		S	S	S					S				S	S	S															T	T																														T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
					295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.										.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure		.	.	.																																																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	K	P	Q	V	V	G	I	Y	R	L	I	M	K	S	G	S	D	N	F	R	A	S	S	I	Q	G	I	M	K	R	I	K	A	K	G	V	E	V	I	I	Y	E	P	V	M	K	E	D	S	F	F	N	.	.	.	.	.	.	.	.	.	S	R	L	E	R	D	L	A	T	F	K	Q	Q	A	D	V
Query Conservation		.	.	.																																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	V	T	D	K	K	I	A	I	L	G	F	A	F	K	K	D	T	G	D	T	R	E	S	S	S	I	Y	I	S	K	Y	L	M	D	E	G	A	H	L	H	I	Y	D	P	K	V	P	R	E	Q	I	V	V	D	L	S	D	Q	V	S	R	L	V	T	I	S	K	D	P	Y	E	A	C	D	G	A	H	A
Template Known Secondary structure		T			T	T									S	S	S	T	T					T	T												T	T	T								S	S	S									T												S	S						T	T		S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	S	N	R	M	A	E	E	L	K	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	I	C	T	E	W	D	M	F	K	E	L
Template Known Secondary structure						S			T					S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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