Job Description P76373 Confidence 100.00% Date Thu Jan 5 12:22:27 GMT 2012 Rank 8 Aligned Residues 370 % Identity 23% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.			.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.		.	.												.	.	.	.														.	.											.	.
Query SS confidence																							.		.	.												.	.	.	.														.	.											.	.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	.	.	H	E	V	V	A	L	D	I	L	P	S	.	.	.	.	R	V	A	M	L	N	D	R	I	S	P	I	V	.	.	D	K	E	I	Q	Q	F	L	Q	S	.	.	D	K	I	H	F	N	A	T	L	D	K	N	E
Query Conservation																							.		.	.												.	.	.	.														.	.											.	.
Alig confidence																							.		.	.												.	.	.	.														.	.											.	.												.
Template Conservation																																																																																.
Template Sequence		K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P	D	F	.	S
Template Known Secondary structure										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T						S		G	.	G
Template Predicted Secondary structure																																																																																.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.
Predicted Secondary structure																							.																	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.																	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	R	D	A	D	Y	V	I	I	A	T	P	T	D	Y	D	P	K	T	N	.	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	.	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	.	.	.	.	.	.	.	.	.	.	R	T	E	N	I	I
Query Conservation																							.																	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	K	A	G	E	D	F	A	L	A
Template Known Secondary structure		G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T														B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	P	E	F	L	R	E	G	K	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	A	N	T	Y	L	A	M	R	V	A	Y	F	N	E	L	D	S	Y
Query Conservation
Alig confidence																																											.	.
Template Conservation																																											.	.
Template Sequence		H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	.	.	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T	F	R	D	L	Q	I	A	A	I	N	Q	L	A	L	Y
Template Known Secondary structure									T	T	S								S							S	S												G	G	G		.	.	S	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270										.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																			.	.																																					.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.																																					.	.	.	.	.	.	.	.	.
Query Sequence		A	E	S	L	G	L	N	S	R	Q	I	I	E	G	V	C	L	.	.	D	P	R	I	G	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	A	N	Y	Q	S	V	P	N	.	.	.	.	.	.	.	.	.	N	L	I	S	A	I	V	D	A	N	R	T	R	K	D	F
Query Conservation																			.	.																																					.	.	.	.	.	.	.	.	.
Alig confidence																			.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	E	A	M	G	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R	A	V	L	W	P	G	A	G	V	G	G	H	C	L	T	K	D	T	Y	H	L	E	R	G	V	K	I	G	R	G	E	L	D	Y	P	E	G	A	D	S	I	Y	V	L	A	R	K	V	N	D	F	M	P	A	H
Template Known Secondary structure					T	T												T	S			S	S	S									S				S	S														T	T	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		287	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		I	A	D	A	I	L	S	.	.	.	.	.	.	.	.	R	K	P	Q	V	V	G	I	Y	R	L	I	M	K	S	G	S	D	N	F	R	A	S	S	I	Q	G	I	M	K	R	I	K	A	K	G	V	E	V	I	I	Y	E	P	V	M	K	E	D	S	F	F	N	S	R	L	E	R	D	L	A	T	F	K	Q
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																																																		.	.
Template Conservation																																																																		.	.
Template Sequence		M	Y	N	L	T	V	A	A	L	E	R	L	G	K	K	M	D	G	S	K	V	A	M	L	G	W	A	F	I	K	D	S	D	D	A	R	N	T	P	S	E	P	Y	R	D	L	C	L	K	A	G	A	S	V	M	V	H	D	P	Y	V	V	N	Y	.	.	P	G	V	E	I	S	D	N	L	E	E	V	V	R
Template Known Secondary structure												T	T	T			S	T	T								S	S	S	S	T	T		S			T	T		T												T								S	S				B	.	.	T	T	B				S							T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	D	V	I	I	S	N	R	M	A	E	E	L	K	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	D	A	I	V	V	L	A	G	H	S	A	Y	S	S	L
Template Known Secondary structure		T		S						S							S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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