Job Description P76373 Confidence 99.95% Date Thu Jan 5 12:22:27 GMT 2012 Rank 19 Aligned Residues 255 % Identity 16% Template c3g0oA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyisobutyrate dehydrogenase; PDBTitle: crystal structure of 3-hydroxyisobutyrate dehydrogenase2 (ygbj) from salmonella typhimurium Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	N	A	T	L	D	K	N	E	A	Y	R	D	A	D	Y	V	I	I
Query Conservation																							.
Alig confidence																							.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	H	V	G	I	V	G	L	G	S	X	G	X	G	A	A	R	S	C	L	R	A	G	L	S	T	W	G	A	D	L	N	P	Q	A	C	A	N	L	L	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	C	G	A	A	A	S	A	R	E	F	A	G	V	V	D	A	L	V	I
Template Known Secondary structure										S													T	T								S											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S				S	S	S	T	T	T	T	T	T		S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	I	I	F	.	.	S	P	E	F	L	R	E	G	K	A	L	Y	D	N	L	H	P	S	R
Query Conservation																																																													.	.
Alig confidence																		.	.	.	.	.	.	.	.																																				.	.																	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.																																																						.	.	.
Template Sequence		L	V	V	N	A	A	Q	V	R	Q	V	L	F	D	G	V	.	.	.	.	.	.	.	.	A	H	L	X	K	P	G	S	A	V	X	V	S	S	T	I	S	S	A	D	A	Q	E	I	A	A	A	L	T	A	L	N	L	N	X	L	D	A	P	V	S	G	G	A	V	K	A	A	Q	G	E	X	T	.	.	.
Template Known Secondary structure				S	S													.	.	.	.	.	.	.	.	G	G	G	S		T	T							S																T	T	T										S							T	T				.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.																																																						.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.									.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	A	N	T	Y	L	A	M	R	V	A	Y	F	N	E	L	D	S	Y	A	E	S	L	G	L	N	S	R	Q	I	I	E	G	V	C	L	D	P	R
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		V	X	A	S	G	S	E	A	A	F	T	R	L	K	P	V	L	D	A	V	A	.	.	S	N	V	Y	R	I	S	D	T	P	G	A	G	S	T	V	K	I	I	H	Q	L	L	A	G	V	H	I	A	A	A	A	E	A	X	A	L	A	A	R	A	G	I	P	L	D	V	X	Y	D	V	V	T	H	A	A	G
Template Known Secondary structure																							.	.								S	S	T	T																														T	T											T	T	S	T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		238	.	240										.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence					.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		I	G	N	.	.	.	.	.	.	.	.	.	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	.	.	A	N	Y	Q	S	V	P	N	N	L	I	S	A	I	V	D	A	N	R	T	R	K	D
Query Conservation					.	.	.	.	.	.	.	.	.																							.	.
Alig confidence					.	.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		N	S	W	X	F	E	N	R	X	Q	H	V	V	D	G	D	Y	T	P	R	S	A	V	D	I	F	V	K	D	L	G	L	V	A	D	T	A	K	A	L	R	F	P	L	P	L	A	S	T	A	L	N	X	F	T	S	A	S	N
Template Known Secondary structure															T	T					S	S	B																		T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions