Return to main results Retrieve Phyre Job Id

Job DescriptionP76373
Confidence99.10%DateThu Jan 5 12:22:27 GMT 2012
Rank110Aligned Residues197
% Identity17%Templatec2d3tB_
PDB info PDB header:lyase, oxidoreductase/transferaseChain: B: PDB Molecule:fatty oxidation complex alpha subunit; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20. ........30.........40.........50......... 60.........70
Predicted Secondary structure 


.
















..........


Query SS confidence 



















.





































. . . . . . . . . .










Query Sequence  KITISGTGYVGLSNGLLIAQ. NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKI. . . . . . . . . . HFNATLDKNEA
Query Conservation 

 




 


 

  

 .
  
 
 
     
  
  
     
  
 
 
     .......... 
  
      
Alig confidence 



















.



















....













..........









.
Template Conservation   
 




 

  

   
 

  
 
 
     
      ....
          
             
        .
Template Sequence  QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAE. . . . AAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD.
Template Known Secondary structure  S

TTTT


SS....TTTSS

SSGGG.
Template Predicted Secondary structure 








....











.
Template SS confidence 















































































   316...320.........330.........340.........350...... ...360.........370.........380.........390
 
   71........80.........90.........100...... ...110... ......120.........130........ .140......
Predicted Secondary structure 

















.




.





..







Query SS confidence 



































.






.
























. .







Query Sequence  YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE. INPYAVM. VIKSTVPVGFTAAMHKKYRTENIIF. . SPEFLREG
Query Conservation     





 


             
      
  .
  
 

.
  


 



  
        
  .. 

    
Alig confidence 












.........













.






.
























..







Template Conservation 
   






 
......... 
  
      
        








 
  

     
 
 

 


 
     
Template Sequence  FGNVDLVVEAVVE. . . . . . . . . NPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPL
Template Known Secondary structure  GGG
S


S.........
TTTS
SS


SSS
TTTSS
GGG

SSTTT

Template Predicted Secondary structure 






.........






















Template SS confidence 















































































   391........400... ......410.........420.........430.........440.........450.........460.
 
   147..150.........160. ........170.........180.........190.........200.........210.........220.....
Predicted Secondary structure 





.











Query SS confidence 














.































































Query Sequence  KALYDNLHPSRIVIG. ERSERAERFAALLQEGAIKQNIPMLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNS
Query Conservation   
        


 
.            
           
      

  

  
      

  

   
 
  


 
Alig confidence 

.........



.
















..











.....







...











.



Template Conservation 

.........

 
  
              
..

 

 
 
 

.....

 


  ...    

  
  
.
   
Template Sequence  VE. . . . . . . . . VIRGEKSSDLAVATTVAYAKKM. . GKNPIVVNDCPG. . . . . FLVNRVLF. . . PYFGGFAKLVSA. GVDF
Template Known Secondary structure  .........
TT

T..T


TT.....TT...T.T

Template Predicted Secondary structure  .........





..







........
.


Template SS confidence 















































































   462. ......470.........480..... ....490....... ..500..... ....510....... ..520.
 
   226...230..
Predicted Secondary structure 
Query SS confidence 






Query Sequence  RQIIEGV
Query Conservation    
    
Alig confidence 






Template Conservation    

 
 
Template Sequence  VRIDKVM
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 






   522......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions