Job Description P76373 Confidence 99.82% Date Thu Jan 5 12:22:27 GMT 2012 Rank 39 Aligned Residues 262 % Identity 14% Template c1yj8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: initial structural analysis of plasmodium falciparum glycerol-3-2 phosphate dehydrogenase Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.										.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.					.	.	.	.	.	.	.	.	.																.
Query SS confidence																							.					.	.	.	.	.	.	.	.	.																.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	V	.	.	.	.	.	.	.	.	.	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	.	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	N	A	T	L	D	K	N	E
Query Conservation																							.					.	.	.	.	.	.	.	.	.																.
Alig confidence																							.					.	.	.	.	.	.	.	.	.																.												.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		L	K	I	S	I	L	G	S	G	N	W	A	S	A	I	S	K	V	V	G	T	N	A	K	N	N	Y	L	F	E	N	E	V	R	M	W	I	R	D	E	F	E	R	M	V	D	I	I	N	N	K	H	E	N	T	K	Y	L	K	G	V	P	.	.	.	.	.	L	P	H	N	I	V	A	H	S	D	L	A	S
Template Known Secondary structure		B								S																		T	T	B		S								S														B		T	T	T	S	T	T		B	.	.	.	.	.			T	T					S	S	S
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.
Predicted Secondary structure																																							.	.												.	.	.																			.	.	.	.	.
Query SS confidence																																							.	.												.	.	.																			.	.	.	.	.
Query Sequence		A	Y	R	D	A	D	Y	V	I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	.	.	I	N	P	Y	A	V	M	V	I	K	S	.	.	.	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	.	.	.	.	.	I	I	F	S
Query Conservation																																							.	.												.	.	.																			.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.													.	.												.	.	.																			.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	N	D	A	D	L	L	I	F	I	V	P	C	.	.	.	.	.	.	.	.	.	.	.	Q	Y	L	E	S	V	L	A	S	I	K	E	I	K	I	A	S	H	A	K	A	I	S	L	T	K	G	F	I	V	K	K	N	Q	M	K	L	C	S	N	Y	I	S	D	F	L	N	I	P	C	S	A	L	S	G
Template Known Secondary structure				T	T		S									.	.	.	.	.	.	.	.	.	.	.											T						T	T									S					T	T													S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.												.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																		190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	F	L	R	E	G	K	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	E	A	E	A	I	K	L	F	A	N	T
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																								.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																								.	.	.
Template Sequence		A	N	I	A	M	D	V	A	M	E	N	F	S	E	A	.	.	.	T	I	G	G	N	D	K	D	S	L	V	I	W	Q	R	V	F	D	L	P	Y	F	K	.	.	.	I	N	C	V	N	E	T	I	E	V	E	I	C	G	A	L	K	N	I	I	T	L	A	C	G	F	C	D	G	L	N	L	P	T	N	S
Template Known Secondary structure		S								T	T						.	.	.					S														B	T	T			.	.	.					S		S																							T	T
Template Predicted Secondary structure																	.	.	.																								.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.																																				.
Query SS confidence																											.	.	.	.	.	.	.	.																																				.
Query Sequence		Y	L	A	M	R	V	A	Y	F	N	E	L	D	S	Y	A	E	S	L	G	L	N	S	R	Q	.	.	.	.	.	.	.	.	I	I	E	G	V	C	L	D	P	R	I	G	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	.	A	N	Y	Q	S	V	P	N	N	L	I
Query Conservation																											.	.	.	.	.	.	.	.																																				.
Alig confidence																											.	.	.	.	.	.	.	.										.	.																									.
Template Conservation																																												.	.
Template Sequence		K	S	A	I	I	R	N	G	I	N	E	M	I	L	F	G	K	V	F	F	Q	K	F	N	E	N	I	L	L	E	S	C	G	F	A	D	I	I	T	S	F	L	.	.	A	G	R	N	A	K	C	S	A	E	F	I	K	S	T	P	K	K	T	W	E	E	L	E	N	E	I	L	K	G	Q	K	L	Q	G	T
Template Known Secondary structure																					S	S				G	G	G	G	G	S	T	T	T										.	.	S	S	S	S										T	T	T	T										T	T	T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	V	D	A	N	R	T	R	K	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	L	K	Y	V	Y	H	M	I	K	E	K
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions