Job Description P76373 Confidence 99.73% Date Thu Jan 5 12:22:27 GMT 2012 Rank 42 Aligned Residues 278 % Identity 14% Template c1wpqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad+], PDBTitle: ternary complex of glycerol 3-phosphate dehydrogenase 12 with nad and dihydroxyactone Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																						.																																						.	.	.	.	.	.	.	.
Query SS confidence																						.																																						.	.	.	.	.	.	.	.
Query Sequence		K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	.	.	.	.	.	.	.	.	I	H	F	N	A	T	L	D	K	N	E	A	Y	R
Query Conservation																						.																																						.	.	.	.	.	.	.	.
Alig confidence																						.																																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	C	I	V	G	S	G	N	W	G	S	A	I	A	K	I	V	G	G	N	A	A	Q	L	A	Q	F	D	P	R	V	T	M	W	V	F	E	E	D	I	G	G	K	K	L	T	E	I	I	N	T	Q	H	E	N	V	K	Y	L	P	G	H	K	L	P	P	N	V	V	A	V	P	D	V	V	Q	A	A	E
Template Known Secondary structure									S																		S	S															T	T														T	T	T	S	T	T					T	T					S							T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.
Predicted Secondary structure																																				.									.	.	.	.	.	.																									.	.
Query SS confidence																																				.									.	.	.	.	.	.																									.	.
Query Sequence		D	A	D	Y	V	I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	.	I	N	P	Y	A	V	M	V	.	.	.	.	.	.	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	I	I	F	.	.	S	P	E	F	L
Query Conservation																																				.									.	.	.	.	.	.																									.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.													.									.	.	.	.	.	.																									.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	D	I	L	I	F	V	V	P	H	.	.	.	.	.	.	.	.	.	.	.	Q	F	I	G	K	I	C	D	Q	L	K	G	H	L	K	A	N	P	T	G	I	S	L	I	K	G	V	D	E	G	P	N	G	L	K	L	I	S	E	V	I	G	E	R	L	G	I	P	M	S	V	L	M	G	A	N	I	A
Template Known Secondary structure		T		S						S			.	.	.	.	.	.	.	.	.	.	.											T	T		S		S	S														T	T													T	T								S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.												.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																		200	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	G	K	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	T	Y	L	A	M
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																								.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.																								.	.	.
Template Sequence		S	E	V	A	D	E	K	F	C	E	T	.	.	.	T	I	G	C	K	D	P	A	Q	G	Q	L	L	K	E	L	M	Q	T	P	N	F	R	.	.	.	I	T	V	V	Q	E	V	D	T	V	E	I	C	G	A	L	K	N	V	V	A	V	G	A	G	F	C	D	G	L	G	F	G	D	N	T	K	A	A	V
Template Known Secondary structure						T	T						.	.	.					S														B	T	T			.	.	.					S																									T	T
Template Predicted Secondary structure													.	.	.																								.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	A	Y	F	N	E	L	D	S	Y	A	E	S	L	G	L	N	S	R	Q	I	I	E	G	V	C	L	D	P	R	I	G	N	H	Y	.	.	.	.	.	.	.	.	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.						.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		I	R	L	G	L	M	E	M	I	A	F	A	K	L	F	C	S	G	P	V	S	S	A	T	F	L	E	S	C	G	.	V	A	D	L	I	T	T	C	Y	G	G	R	N	R	K	V	A	E	A	F	A	R	T	G	K	S	I	E	Q	L	E	K	E	L	L	N	G	Q	K	L	Q	G	P	E	T	A	R	E	L
Template Known Secondary structure																	S	S	S				G	G	G	G	G	S	T	T	T	.																																			S	T	T
Template Predicted Secondary structure																																.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
				262	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.	.								.	.												.	.
Query SS confidence		.	.								.	.												.	.
Query Sequence		.	.	L	A	N	Y	Q	S	V	.	.	P	N	N	L	I	S	A	I	V	D	A	.	.	N	R	T	R	K	D	F	I	A	D	A	I	L	S	R	K	P	Q
Query Conservation		.	.								.	.												.	.
Alig confidence		.	.								.	.												.	.
Template Conservation
Template Sequence		Y	S	I	L	Q	H	K	G	L	V	D	K	F	P	L	F	M	A	V	Y	K	V	C	Y	E	G	Q	P	V	G	E	F	I	H	C	L	Q	N	H	P	E	H
Template Known Secondary structure							T	T	T		G	G	G													T				G	G	G							T			S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions