Job Description P76373 Confidence 99.81% Date Thu Jan 5 12:22:27 GMT 2012 Rank 40 Aligned Residues 273 % Identity 15% Template c1txgA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: structure of glycerol-3-phosphate dehydrogenase from archaeoglobus2 fulgidus Resolution 1.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.								.	.
Query SS confidence																							.								.	.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	V	V	A	L	.	.	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	N	A	T	L	D	K	N	E	A	Y	R	D	A	D	Y	V
Query Conservation																							.								.	.
Alig confidence																							.								.	.																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		M	I	V	S	I	L	G	A	G	A	M	G	S	A	L	S	V	P	L	V	D	N	G	N	E	V	R	I	W	G	T	E	F	D	T	E	I	L	K	S	I	S	A	G	R	E	H	P	R	L	G	V	K	L	.	.	.	.	.	N	G	V	E	I	F	W	P	E	Q	L	E	K	C	L	E	N	A	E	V	V
Template Known Secondary structure								S																									G	G	G									T	T			B	T	T	T	T	B			.	.	.	.	.		S						G	G	G						T	T		S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																															.											.	.	.	.	.	.																				.	.	.	.
Query SS confidence																															.											.	.	.	.	.	.																				.	.	.	.
Query Sequence		I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	.	I	N	P	Y	A	V	M	V	I	K	.	.	.	.	.	.	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	.	.	.	.	I	I	F	S	P	E	F	L	R	E	G
Query Conservation																															.											.	.	.	.	.	.																				.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.													.											.	.	.	.	.	.																				.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	G	V	S	T	.	.	.	.	.	.	.	.	.	.	.	D	G	V	L	P	V	M	S	R	I	L	P	Y	L	K	D	Q	Y	I	V	L	I	S	K	G	L	I	D	F	D	N	S	V	L	T	V	P	E	A	V	W	R	L	K	H	D	L	R	E	R	T	V	A	I	T	G	P	A	I	A	R	E	V
Template Known Secondary structure					S		G	.	.	.	.	.	.	.	.	.	.	.	G	G									T	T	T			S									S					T	T											T	T	S	T	T		G	G	G						S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.												.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																							200	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	T	Y	L
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																								.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																								.	.	.
Template Sequence		A	K	R	M	P	T	T	V	.	.	.	V	F	S	S	P	S	E	S	S	A	N	K	M	K	E	I	F	E	T	E	Y	F	G	.	.	.	V	E	V	T	T	D	I	I	G	T	E	I	T	S	A	L	K	N	V	Y	S	I	A	I	A	W	I	R	G	Y	E	S	R	K	N	V	E	M	S	N	A	K	G
Template Known Secondary structure			T	T						.	.	.					S														B	T	T			.	.	.					S																														T
Template Predicted Secondary structure										.	.	.																								.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																					.	260
Predicted Secondary structure																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	R	V	A	Y	F	N	E	L	D	S	Y	A	E	S	L	G	L	N	S	R	Q	I	I	E	G	V	C	L	.	.	.	.	D	P	R	I	G	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q
Query Conservation																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	A	T	R	A	I	N	E	M	A	E	L	I	E	I	L	G	G	D	R	E	T	A	F	G	L	S	G	F	G	D	L	I	A	T	F	R	G	G	R	N	G	M	L	G	E	L	L	G	K	G	L	S	I	D	E	A	M	E	E	L	E	R	R	G	V	G	V	V	E	G	Y	K	T	A	E	K	A	Y
Template Known Secondary structure																			T	S		G	G	G	G	G	S	T	T	T							T	T	T													T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		L	L	A	N	Y	Q	S	V	P	N	N	L	I	S	A	I	V	D	A	.	.	N	R	T	R	K	D	F	I	A	D	A	I	L	S	R	K
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		R	L	S	S	K	I	N	A	D	T	K	L	L	D	S	I	Y	R	V	L	Y	E	G	L	K	V	E	E	V	L	F	E	L	A	T	F	K
Template Known Secondary structure							T	T															S													T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions