Job Description P76373 Confidence 98.35% Date Thu Jan 5 12:22:27 GMT 2012 Rank 188 Aligned Residues 139 % Identity 16% Template c1smkD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase, glyoxysomal; PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure									.															.			.	.																																							.	.	.	.
Query SS confidence									.															.			.	.																																							.	.	.	.
Query Sequence		M	K	I	T	I	S	G	.	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	.	.	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	.	.	.	.	N	A	T	L	D	K	N	E	A	Y	R
Query Conservation									.															.			.	.																																							.	.	.	.
Alig confidence									.															.			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	V	A	I	L	G	A	A	G	G	I	G	Q	P	L	A	M	L	M	K	M	N	P	L	V	S	V	L	H	L	Y	D	V	V	N	A	P	G	V	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	S	H	M	D	T	G	A	V	V	R	G	F	L	G	Q	Q	Q	L	E	A	A	L	T
Template Known Secondary structure								T	T	T	S	T	T										T		T	T									S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.				T	S		S	S								S									T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.														.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		D	A	D	Y	V	I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	.	.	.	.	.	S	S	V	E	S	V	I	K	D	V	V	E	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	I	I	F	S	P	E	F	L	R	E	G	K
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																						.
Template Conservation																																																		.
Template Sequence		G	M	D	L	I	I	V	P	A	G	V	P	R	K	P	G	M	T	R	D	D	L	F	K	I	N	A	G	I	V	K	T	L	C	E	G	I	A	K	C	C	P	R	A	I	V	N	L	.	I	S	N	P	V	N	S	T	V	P	I	A	A	E	V	F	K	K	A	G	T	Y	D	P	K	R	L	L	G	V	T
Template Known Secondary structure		T		S												T	T	S	S			T	T																				T	T	S					.			S																T	T				T	T	S
Template Predicted Secondary structure																																																		.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		148	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	D	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	D	V	V	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions