Job Description P76373 Confidence 100.00% Date Thu Jan 5 12:22:27 GMT 2012 Rank 9 Aligned Residues 383 % Identity 27% Template c1mv8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa Resolution 1.55 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.																																				.	.
Query SS confidence																							.																																				.	.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	.	.	D	K	I	H	F	N	A	T	L	D	K	N	E	A	Y	R	D	A	D	Y	V
Query Conservation																							.																																				.	.
Alig confidence																							.																																				.	.
Template Conservation
Template Sequence		M	R	I	S	I	F	G	L	G	Y	V	G	A	V	C	A	G	C	L	S	A	R	G	H	E	V	I	G	V	D	V	S	S	T	K	I	D	L	I	N	Q	G	K	S	P	I	V	E	P	G	L	E	A	L	L	Q	Q	G	R	Q	T	G	R	L	S	G	T	T	D	F	K	K	A	V	L	D	S	D	V	S
Template Known Secondary structure										S	T	T											T	T								S										T	T			S	S			T	T											T	T						S								T		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	I	.	.	.	.	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	.	.	.	.	.	.	.	.	.	.	R	T	E	N	I	I	F	S	P	E	F	L
Query Conservation																																.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Alig confidence												.																				.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		F	I	C	V	G	T	P	S	K	K	.	N	G	D	L	D	L	G	Y	I	E	T	V	C	R	E	I	G	F	A	I	R	E	K	S	E	R	H	T	V	V	V	R	S	T	V	L	P	G	T	V	N	N	V	V	I	P	L	I	E	D	C	S	G	K	K	A	G	V	D	F	G	V	G	T	N	P	E	F	L
Template Known Secondary structure									B		T	.	T	S	S	B																	T	T			S								S				T	T					T										S			B	T	T	T	B
Template Predicted Secondary structure												.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	G	K	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	A	N	T	Y	L	A	M	R	V	A	Y	F	N	E	L	D	S	Y	A	E	S	L	G	L
Query Conservation
Alig confidence																																					.	.	.
Template Conservation																																					.	.	.
Template Sequence		R	E	S	T	A	I	K	D	Y	D	F	P	P	M	T	V	I	G	E	L	D	K	Q	T	G	D	L	L	E	E	I	Y	R	E	L	.	.	.	D	A	P	I	I	R	K	T	V	E	V	A	E	M	I	K	Y	T	C	N	V	W	H	A	A	K	V	T	F	A	N	E	I	G	N	I	A	K	A	V	G	V
Template Known Secondary structure			T	T	S							S		S							S	S												T	T	S	.	.	.	S	S																																						T	T	S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																								.	.
Query SS confidence																		.	.																								.	.
Query Sequence		N	S	R	Q	I	I	E	G	V	C	L	D	P	R	I	G	.	.	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	.	.	A	N	Y	Q	S	V	P	N	N	L	I	S	A	I	V	D	A	N	R	T	R	K	D	F	I	A	D	A	I	L	S	R	K	P	Q	V	V
Query Conservation																		.	.																								.	.
Alig confidence																		.	.																								.	.
Template Conservation
Template Sequence		D	G	R	E	V	M	D	V	I	C	Q	D	H	K	L	N	L	S	R	Y	Y	M	R	P	G	F	A	F	G	G	S	C	L	P	K	D	V	R	A	L	T	Y	R	A	S	Q	L	D	V	E	H	P	M	L	G	S	L	M	R	S	N	S	N	Q	V	Q	K	A	F	D	L	I	T	S	H	D	T	R	K	V
Template Known Secondary structure											T	T		T	T	T	T	T	S	S	T	T		S			S				S	S	S															T	T				T	T	G	G	G																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.															.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	Y	R	L	I	M	K	S	G	S	D	N	F	R	A	S	S	I	Q	G	I	M	K	R	I	K	A	K	G	V	E	V	I	I	Y	E	P	V	M	K	E	D	S	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	R	L	E	R	D	L	A	T	F	K	Q	Q	A	D	V	I	I	S
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	L	G	L	S	F	K	A	G	T	D	D	L	R	E	S	P	L	V	E	L	A	E	M	L	I	G	K	G	Y	E	L	R	I	F	D	R	N	V	E	Y	A	R	V	H	G	A	N	K	E	Y	I	E	S	K	I	P	H	V	S	S	L	L	V	S	D	L	D	E	V	V	A	S	S	D	V	L	V	L
Template Known Secondary structure							S	S	S	T	T					T	T													T	T														T	T	S	S	S								T	S					T	T	B		S										S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.					.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		N	R	M	A	E	E	L	K	D	V	.	.	.	.	A	D	K	V	Y	T	R	D	L	F	G	S
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		G	N	G	D	E	L	F	V	D	L	V	N	K	T	P	S	G	K	K	L	V	D	L	V	G	F
Template Known Secondary structure			S			G	G	G						S			T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.