Job Description P76373 Confidence 99.88% Date Thu Jan 5 12:22:27 GMT 2012 Rank 34 Aligned Residues 295 % Identity 17% Template c1m67A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.																				.
Query SS confidence																							.																				.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	.	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	N	A	T	L	D	K	N	E	A	Y	R	D	A	D	Y	V	I
Query Conservation																							.																				.
Alig confidence																							.																				.												.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		N	K	A	V	V	F	G	S	G	A	F	G	T	A	L	A	M	V	L	S	K	K	C	R	E	V	C	V	W	H	M	N	E	E	E	V	R	L	V	N	E	K	R	E	N	V	L	F	L	K	G	V	Q	.	.	.	.	.	L	A	S	N	I	T	F	T	S	D	V	E	K	A	Y	N	G	A	E	I	I	L
Template Known Secondary structure										S												T	T									S												T	S		T	T	T	S	T	T			.	.	.	.	.			T	T					S							T	T		S	S
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	.	.	.	.	.	.	E	N	I	I	F	S	P	E	F	L	R	E	G	K	A	L	Y	D	N
Query Conservation																																																									.	.	.	.	.	.
Alig confidence												.	.	.	.																																										.	.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		F	V	I	P	T	Q	F	L	R	G	.	.	.	.	F	F	E	K	S	G	G	N	L	I	A	Y	A	K	E	K	Q	V	P	V	L	V	C	T	K	G	I	E	R	S	T	L	K	F	P	A	E	I	I	G	E	F	L	P	S	P	L	L	S	V	L	A	G	P	S	F	A	I	E	V	A	T	G	V	F	T
Template Known Secondary structure												.	.	.	.																	T									S			T	T	T									T	T	T	S		G	G	G						S	S								T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	P	S	R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A	I	K	Q	N	I	P	M	L	F	T	D	S	T	E	A	E	A	I	K	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	T	Y	L	A	M	R	V	A	Y	F	N	E	L	D
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		C	.	.	.	.	V	S	I	A	S	A	D	I	N	V	A	R	R	L	Q	R	I	M	S	T	G	D	R	S	F	V	C	W	A	T	T	D	T	V	G	C	E	V	A	S	A	V	K	N	V	L	A	I	G	S	G	V	A	N	G	L	G	M	G	L	N	A	R	A	A	L	I	M	R	G	L	L	E	I	R
Template Known Secondary structure			.	.	.	.						S	S												S		T	T	S	S							S																									T	T
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		167					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.							.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.													.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.				.
Query SS confidence																						.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.				.
Query Sequence		S	Y	A	E	S	L	G	L	N	S	R	Q	I	I	E	G	V	C	L	D	.	.	.	.	.	.	P	R	I	G	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	L	.	L	A	N	Y	Q	S	V	P	N	N	L	I	S	A	I
Query Conservation																						.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.				.
Alig confidence																						.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation
Template Sequence		D	L	T	A	A	L	G	G	D	G	S	A	V	F	G	L	A	G	L	G	D	L	Q	L	T	C	S	S	E	L	S	R	N	F	T	V	G	K	K	L	G	K	G	L	P	I	E	E	I	Q	R	A	V	A	E	G	V	A	T	A	D	P	L	M	R	L	A	K	Q	L	K	V	K	M	P	L	C	H	Q	I
Template Known Secondary structure							T	T				T	T	T	T	S	T	T	T									S		T	T	S												T																											T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	N	R	T	R	K	D	F	I	A	D	A	I	L	S	R	K	P	Q	V	V	G	I	Y	R	L	I	M	K	S	G	S	D	N	F	R	A	S	S	I	Q	G	I	M	K	R	I	K	A	K	G	V	E	V	I	I	Y	E	P	V	M	K
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	K	K	N	P	R	D	A	L	A	D	L	L	S	C	G	L	Q	D	E	G	L	P	P	L	F	K
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S												G	G	G		S								S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.																																	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions