Job Description P76373 Confidence 98.34% Date Thu Jan 5 12:22:27 GMT 2012 Rank 190 Aligned Residues 144 % Identity 22% Template c1ldbA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-l-lactate dehydrogenase; PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.			.	.
Query SS confidence																						.			.	.
Query Sequence		K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	H	.	.	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	N	A	T	L	D	K	N	E	A	Y	R	D	A	D	Y	V	I
Query Conservation																						.			.	.
Alig confidence																						.			.	.																		.	.	.	.	.	.	.	.																		.	.
Template Conservation																																												.	.	.	.	.	.	.	.																		.	.
Template Sequence		R	V	V	V	I	G	A	G	F	V	G	A	S	Y	V	F	A	L	M	N	Q	G	I	A	D	E	I	V	L	I	D	A	N	E	S	K	A	I	G	D	A	M	.	.	.	.	.	.	.	.	D	F	N	H	G	K	V	F	A	P	K	P	V	D	I	W	D	.	.	Y	D	D	C	R	D	A	D	L	V	V
Template Known Secondary structure									S												T	T	T			S							S	S										.	.	.	.	.	.	.	.						G	G	G	T	T								.	.	G	G	G		S	S		S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	I	I	F	S	P	E	F	L	R	E	G	K	A	L	Y	D	N	L	H	P	S	R	I
Query Conservation
Alig confidence						.	.	.																																.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.																																.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	C	A	G	.	.	.	A	N	D	L	V	D	K	N	I	A	I	F	R	S	I	V	E	S	V	M	A	S	G	F	Q	G	L	F	L	V	A	.	T	N	P	V	D	I	L	T	Y	A	T	W	K	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	H	E	R	V
Template Known Secondary structure						.	.	.																						T	T			S						.		S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S
Template Predicted Secondary structure						.	.	.																																.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																				.	.	.	.	.	.	150
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	S	G	T	I	L	D	T	A	R	F	R	F	L	L	G	E	Y	F
Template Known Secondary structure					G	G	G	T													T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions