Job Description P76373 Confidence 98.64% Date Thu Jan 5 12:22:27 GMT 2012 Rank 142 Aligned Residues 145 % Identity 20% Template c1gv1D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																							.		.	.																																											.
Query SS confidence																							.		.	.																																											.
Query Sequence		M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	L	L	I	A	Q	.	N	.	.	H	E	V	V	A	L	D	I	L	P	S	R	V	A	M	L	N	D	R	I	S	P	I	V	D	K	E	I	Q	Q	F	L	Q	S	D	K	I	H	F	N	A	T	.	L	D	K	N	E	A	Y	R	D	A	D	Y
Query Conservation																							.		.	.																																											.
Alig confidence																							.		.	.																			.	.	.	.	.	.	.	.																	.
Template Conservation																																													.	.	.	.	.	.	.	.
Template Sequence		M	K	I	T	V	I	G	A	G	N	V	G	A	T	T	A	F	R	I	A	D	K	K	L	A	R	E	L	V	L	L	D	V	V	E	G	I	P	Q	G	K	G	L	.	.	.	.	.	.	.	.	D	M	Y	E	T	G	P	V	G	L	F	D	T	K	I	T	G	S	N	D	Y	A	D	T	A	D	S	D	I
Template Known Secondary structure										S													T	T			S							S	S	S	S								.	.	.	.	.	.	.	.				T	T					T									S		G	G	G	S	T	T		S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	S	V	E	S	V	I	K	D	V	V	E	I	N	P	Y	A	V	M	V	I	K	S	T	V	P	V	G	F	T	A	A	M	H	K	K	Y	R	T	E	N	I	I	F	S	P	E	F	L	R	E	G	K	A	L	Y	D	N	L	H	P	S
Query Conservation
Alig confidence															.	.	.	.	.																							.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																							.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	I	T	A	G	L	L	L	M	K	N	A	.	.	.	.	.	G	I	V	K	E	V	T	D	N	I	M	K	H	S	K	N	P	I	I	I	V	V	.	S	N	P	L	D	I	M	T	H	V	A	W	V	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	K	E
Template Known Secondary structure															.	.	.	.	.												T	T		S	S							.		S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			G	G
Template Predicted Secondary structure															.	.	.	.	.																							.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																				.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	V	I	G	E	R	S	E	R	A	E	R	F	A	A	L	L	Q	E	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	I	G	M	A	G	V	L	D	A	A	R	F	R	S	F	I	A	M	E	L
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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