Job Description P69348 Confidence 1.95% Date Thu Jan 5 12:11:24 GMT 2012 Rank 91 Aligned Residues 71 % Identity 18% Template c1nvpD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.											.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																										.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	W	D	D	Y	L	Y	W	Q	E	T	D	K	R	I	V	K	K	I	N	E	L	I	K	D	T	R	R	T	P	F	E	G	K	G	K	P	E	P	.	L	K	H	N	L	S	G	F	W	S	R	R	I	T	E	E	H	R	L	V	.	.	.	.	.	.	.	.	.	.	Y	A	V	T	D	D	S	L	L
Query Conservation																																										.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.									.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.
Template Sequence		E	S	L	D	E	L	I	Q	S	Q	Q	I	T	P	Q	L	A	L	Q	V	L	L	Q	F	D	K	A	I	N	A	A	L	A	Q	R	V	R	N	R	V	N	F	R	G	S	L	N	T	Y	.	.	R	F	C	D	N	V	W	T	F	V	L	N	D	V	E	F	R	E	V	T	E	L	I	K	V	D	K	V	K
Template Known Secondary structure										T	T	S	S																							T															.	.				T	T														S	S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		77	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	A	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions