Job Description P77304 Confidence 100.00% Date Thu Jan 5 12:27:31 GMT 2012 Rank 1 Aligned Residues 448 % Identity 21% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		A	F	Y	L	I	F	S	I	E	L	W	E	R	F	G	Y	Y	G	L	Q	G	I	M	A	V	Y	L	V	K	Q	L	.	.	.	.	.	.	G	M	S	E	A	D	S	I	T	L	F	S	S	F	S	A	L	V	Y	G	L	V	A	I	G	G	W	L	G	D	K	V	L	G	T	K	R	V	I	M	L	G	A
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	P	Y	I	I	A	S	E	A	C	E	R	F	S	F	Y	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S
Template Known Secondary structure				T																											S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		I	V	L	A	I	G	Y	A	L	V	A	W	S	G	H	D	A	G	I	V	Y	M	G	M	A	A	I	A	V	G	N	G	L	F	K	A	N	P	S	S	L	L	S	T	C	Y	E	K	N	D	P	R	.	L	D	G	A	F	T	M	Y	Y	M	S	V	N	I	G	S	F	F	S	M	I	A	T	P	W	L	A
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		L	I	Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L
Template Known Secondary structure														T	S	S																		T	T											T		S	T	T	T	T	T																							T	S	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Y	G	W	S	V	A	F	A	L	S	V	V	G	L	L	I	T	I	V	N	F	A	F	C	Q	R	W	V	K	Q	Y	G	S	K	P	D	F	E	P	I	N	Y	R	N	L	L	L	T	I	I	G	V	V	A	L	I	A	I	A	T	W	L	L	H	N	Q	E	V	A	R	M	A	L	G	V	V	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F	V
Template Known Secondary structure			T	S																						S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	V	V	I	F	G	K	E	A	F	A	M	K	G	A	A	R	R	K	M	I	V	A	F	I	L	M	L	E	A	I	I	F	F	V	L	Y	S	Q	M	P	T	S	L	N	F	F	A	I	R	N	V	E	H	S	I	L	G	L	A	V	E	P	E	Q	Y	Q	A	L	N	P	F	W	I	I	I	G	S	P
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence		G	A	G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	.	.	.	.	.	.	.	E	P	A	M	M	Q	A	L	N	P
Template Known Secondary structure			T	G	G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S					T	T	T	S	S	T	T	T									S				S	S	S	.	.	.	.	.	.	.							T	T	S	G
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.								.	.	.	.	340	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	A	I	Y	N	K	M	G	D	T	L	P	M	P	T	K	F	A	I	G	M	V	M	C	S	G	A	F	L	I	L	P	L	G	A	K	F	A	S	D	A	G	I	V	S	V	S	W	L	V	A	S	Y	G	L	Q	S	I	G	E	L	M	I	S	G	L	G	L	A	M	V	A	Q	L	V	P	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	V	M	L	L	I	P	F	N	N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K	A
Template Known Secondary structure		G	G					G	G	G	T	T	T									T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	G	F	I	M	G	S	W	F	L	T	T	A	G	A	N	L	I	G	G	Y	V	A	G	M	M	A	V	P	D	N	V	T	D	P	L	M	S	L	E	V	Y	G	R	V	F	L	Q	I	G	V	A	T	A	V	I	A	V	L	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	G	T	I	M	S	F	W	T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F	A	I	L	A	A	I	V	F
Template Known Secondary structure				T	T	T					G	G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.