Job Description P18196 Confidence 8.81% Date Thu Jan 5 11:36:43 GMT 2012 Rank 78 Aligned Residues 75 % Identity 16% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		Y	A	P	Q	C	D	L	I	V	T	S	H	V	S	A	G	A	E	L	I	A	D	G	N	I	H	V	Y	G	M	M	R	G	R	A	L	A	G	A	S	G	D	R	E	T	Q	I	F	C	T	N	L	M	A	.	.	E	L	V	S	I	A	G	E	Y	W	L	S	D	Q	I	P	A	E	F	Y	G	K	A	A
Query Conservation																																																								.	.
Alig confidence														.	.	.	.	.	.	.	.																										.									.	.
Template Conservation														.	.	.	.	.	.	.	.																										.
Template Sequence		F	H	P	V	H	G	T	L	A	T	V	G	.	.	.	.	.	.	.	.	S	D	G	R	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q	P	.	I	S	A	C	C	F	N	H	N	G	N	I	F	A	Y	A	S	S	Y	D	W	S	K	G	H	E	F	Y	N	P	Q	K	K	N
Template Known Secondary structure				T	T	T								.	.	.	.	.	.	.	.	T	T	S							T	T	T	T										S	S		.								T	T	S	S										S	T	T		G	G	G			T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																										.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		217	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Q	L	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	I	F	L	R	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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