Job Description P18196 Confidence 16.51% Date Thu Jan 5 11:36:43 GMT 2012 Rank 44 Aligned Residues 162 % Identity 9% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		H	E	A	E	P	K	V	I	H	Q	A	L	E	D	K	I	A	Q	A	P	A	F	L	K	H	A	P	V	V	L	N	V	S	A	L	E	D	P	.	.	.	.	.	.	.	V	N	W	S	A	M	H	K	A	V	S	A	T	G	L	R	V	I	G	V	S	G	C	K	D	A	Q	L	K	A	E	I	E	K	M
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																		.																						.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	.	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T												T	.	G	G	G	T	S		T	T	T								T	T	T	T	T	T	T																		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	I	L	T	E	G	K	E	K	A	P	R	P	A	P	T	P	Q	A	P	A	Q	N	T	T	P	V	T	K	T	R	L	I	D	T	P	V	R	S	G	Q	R	I	Y	A	P	Q	C	D	L	I	V	T	S	H	V	S	A	G	A	E	L	I	A	D	G	N	I	H	V	Y	G	M	M	R	G	R	A
Query Conservation
Alig confidence		.	.	.	.	.	.																																						.		.			.																			.
Template Conservation		.	.	.	.	.	.																																						.		.			.																			.
Template Sequence		.	.	.	.	.	.	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	.	I	.	K	V	.	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	.	G	V	E	M	F	R	K	L	L	D	E	G
Template Known Secondary structure		.	.	.	.	.	.	S						G	G	G	S	S												T	T	T										B	S		.		.		T	.	T							S	S	S	S								.					S	S	S			S
Template Predicted Secondary structure		.	.	.	.	.	.																																						.		.			.																			.
Template SS confidence
								484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.		.	.		.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.		.	.	.	.	.	.	.	.	550	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	A	S	G	D	R	E	T	Q	I	F	C	T	N	L	M	A	E	L	V	S	I	A	G	E	Y	W	L	S	D	Q	I	P	A	E	F	Y	G	K	A	A	R	L	Q	L
Query Conservation
Alig confidence					.	.	.	.																		.
Template Conservation					.	.	.	.																		.
Template Sequence		R	A	G	.	.	.	.	E	N	V	G	V	L	L	R	G	I	K	R	E	E	I	E	R	.	G	Q	V	L	A	K	P	G	T	I	K	P	H	T	K	F	E	S	E	V	Y	I
Template Known Secondary structure			T	T	.	.	.	.									S			T	T	S			T	.	T						T	T	S
Template Predicted Secondary structure					.	.	.	.																		.
Template SS confidence
		554	.	.					.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions