Job Description P77672 Confidence 25.25% Date Wed Jan 25 15:21:11 GMT 2012 Rank 6 Aligned Residues 230 % Identity 13% Template c3k3gA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Resolution 2.40 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	C	A	V	L	L	G	M	L	L	N	A	G	Y	S	L	P	V	A	C	V	A	T	L	L	L	G	L	L	A	G	F	F	N	G	V	L	V	A	W	L	K	I	P	A	I	V	A	T	L	G	T	L	G	L	Y	R	G	I	M	L	L	W	T	G	G	K	W	I	E	G	L	P	A	E	L	K	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	A	G	I	A	L	P	F	F	F	N	Y	E	P	A	M	L	G	Y	V	A	L	N	G	A	F	T	T	I	I	M	A	S	L	L	N	F	L	G	K	W	G	V	P	A	L	T	A	P	F	V	L	A	T	W	L	L	M	F	G	V	Y	K	L	S	L	F	H	P	G	A	L	I	A	P	A	L	P	S
Template Known Secondary structure												B				T	T																								G	G	G	T				T	T												G	G	G	G	T		T	T	S		B		T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	P	L	L	L	G	V	S	A	I	G	W	L	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	V	A	F	M	A	W	L	L	A	K	T	A	F	G	R	S	F	Y	A	T	G	D	N	L	Q	G	A	R	Q	L	G	V	R	T	E	A	I	R	I	V	A	F	S	L	N	G	C
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	M	G	T	V	T	G	R	T	F	M	E	G	L	F	K	G	V	G	E	V	M	F	Q	D	N	I	V	T	G	V	I	F	V	V	A	I	L	V	N	S	R	I	S	A	L	F	A	V	I	G	S	L	V	G	L	C	T	A	L	I	M	H	S	P	E	T	P	V	R	L	G	L	Y	G	F	N	S	V
Template Known Secondary structure																						G	G	G	T																																							T	T								T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	A	L	A	G	I	V	F	A	S	Q	I	G	F	I	P	N	Q	T	G	T	G	L	E	M	K	A	I	A	A	C	V	L	G	G	I	S	L	L	G	G	S	G	A	I	I	G	A	V	L	G	A	W	F	L	T	Q	I	D	S	V	L	V	L	L	R	I	P	A	W	W	N	D	F	I	A	G	L	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	C	G	I	A	.	.	.	.	.	.	.	M	G	G	I	F	F	Y	L	N	I	R	T	F	L	Y	A	L	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	V	L	G	A	I	A	T	G	A	F	S	V	L	L	S	P	I	G	M	P	A	L	T	W	P	F	I	V	V	T	W
Template Known Secondary structure							.	.	.	.	.	.	.		T	T	T	S	B			S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	G	G	G	T				T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.								.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	V	L	V	F	D	G	R	L	R	C	A	L	E	R	N	L	R	R	Q	K	Y	A	R	F	M	T	P	P	P	S	V	K	P	A	S	S	G	K	K	R	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	L	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	M	F	R	N	I	A	Q	V	P	T	E	K	A	G	T	P	E	D	N	L	R	S
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		T	T	S		B			T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.																.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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